Non-Coding RNA Search

Ss1.1-Pig1-106E10.5

Sequence:


               
               GAACTCTATCCGGAGGCTGCATTCCCATCACTCGGATCCCAGGAACCAGCCGGAGGAGAG
TGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCTGCTCTGT
GATGAGCGAAGAGCCAGAGGGCCGCAGTTACTCCACGCTGACCACCGTGCGGGAGATTGA
AACACAGACTGAACTGCTGTGTCCAGGTTCTGGGCGGGCTGAGGAGGAGGAAGATCGGGA
TGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTGCGGGCCAA
GCCCACGGGCAACGGCATCTACATCAATGGGCGGGGGCACCTGGTCTGACCCAGGCTTGC
CTCCCTCCCCTAAGCCTGGCTCCCTCTGCTGACGTGGAAGAGTTCAGCTTATCCCCAGGG
GAGCCTCCCTAAACACTCCTTTCTCGAGTAAGATGCTCCCCATCCCACTGACTGCTCGAC
CTTTTCCTCCAGCCCTTCTGTTAGATGATGGAAGGGCTCTCCTGGTTGAGTCTCTCCCAC
AGTGCGTGCAGGTCACTGTGTGTGTGTCTGTGCTTGTGTGAATATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCTATCCGGAGGCTGCATTCCCATCACTCGGATCCCAGGAACCAGCCGGAGGAGAG
TGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCTGCTCTGT
GATGAGCGAAGAGCCAGAGGGCCGCAGTTACTCCACGCTGACCACCGTGCGGGAGATTGA
AACACAGACTGAACTGCTGTGTCCAGGTTCTGGGCGGGCTGAGGAGGAGGAAGATCGGGA
TGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTGCGGGCCAA
GCCCACGGGCAACGGCATCTACATCAATGGGCGGGGGCACCTGGTCTGACCCAGGCTTGC
CTCCCTCCCCTAAGCCTGGCTCCCTCTGCTGACGTGGAAGAGTTCAGCTTATCCCCAGGG
GAGCCTCCCTAAACACTCCTTTCTCGAGTAAGATGCTCCCCATCCCACTGACTGCTCGAC
CTTTTCCTCCAGCCCTTCTGTTAGATGATGGAAGGGCTCTCCTGGTTGAGTCTCTCCCAC
AGTGCGTGCAGGTCACTGTGTGTGTGTCTGTGCTTGTGTGAATATTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-516, - strand, RNAz p=0.96776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-516, - strand, RNAz p=0.96776

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-581, gnl|bosTau2|chr3 (7731236-7731696)
               

               
               124-581, gnl|Hg17|chr1 (157855749-157855294)
               

               
               124-581, gnl|Mm7|chr1 (171356673-171357131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-581, gnl|bosTau2|chr3 (7731236-7731696)
               

               
               124-581, gnl|Hg17|chr1 (157855749-157855294)
               

               
               124-581, gnl|Mm7|chr1 (171356673-171357131)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               clu (0.119646)

	124-581, gnl\|bosTau2\|chr3 (7731236-7731696)
	124-581, gnl\|Hg17\|chr1 (157855749-157855294)
	124-581, gnl\|Mm7\|chr1 (171356673-171357131)