Non-Coding RNA Search

Ss1.1-Pig1-106L15.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGGATCTGGATTTCTTTATTAACAGACATGAGCACG
ACCTGTTACAGAAGTTTGTGCTTTCCAAAAAACAGTTACTGAACGTGAAAAAGGAACCCA
AGCAAAGAGGGAGGAGGTGAAGAGGGACCACCCATAGCCCTGACCTGAATCACGCCTAGG
GCCTCCAGCTTGGGACCTGCCCAGCAGGAGGGGGCAGGAAAGGGCCAGGAAGCTGAGGGG
CCCCAGCTGGGCCTGCTACTTCCTTCAGGCCAGGTGGGGAGGTCAAGAGAAGGGTGGGGA
AGGGGGGTCCCAGGGAACCAGAGCCCACGAGCCGTTTATTGCCATGTTTTAAAATTCGTG
CAAAATATCTGAAGCCCTGGACAGAGAATACAAAGTGATATTTTTCCAAGAAACAGAAAA
CTAGGAAAAGAGGTGGGGGGAACATTTTCCCACCAGAGCATCCCCCCACACAGGCCCCAA
AGCAGGGTGAGGCCTCCACCCCGGCCAGCTGAGTGACCAGGGAGGACTAAGATCTACAAT
CTGGACCGGGCAGGAAGGGGATGGAATTTGCAACAGCGTCTCAACTACCAACGGGAGGAA
AACCGGTCAACTGTACAAGTCTCCTATCAACTTTTAAAAAAAAGAAAAGCTGTAAAAGTC
GGGCCCTGTGGGTAGGGAAGCGGCCAAGTCCCCGGCCAGGGCCGGAGTCCAGAGGGTGCC
AGGCGGAGCTGCTGCAAGTGCAGGCACTGCGGGCCGTCTGGCCAGAGGCCAGCGCAGGTG
TGAGGCCTTGGCGAGGGCAGCCTGAGGACGGGCACCACCGCTAGTCGCCACCCTCGAAGC
CCTCCTCCTCTTCTGGTACTGGGTCTGCATCCCAGCAAGTGATGTCGATTTCTGGAGGCT
TGTTGTAGAACACAGGAGGCGGGGCCTTTGCACACAGCTCTTCCGATTGGGCAAACTCCT
CCTCCTGTGATTGGCTGAAGTACCCCTCACTGGCCTGGGTCCCCTCCTTCTGGGTGGTCT
CGCCATTGGTCAGCAGGTGGGGCTCTGGCTCTGGCTCCAGCTCCGGCTCCGGCTCTGGCT
CCCGATCCGGCTCTAGATCCAGCTCCTCTAGAGCTGAGGGCAGAGTTGGAGCCTGAGGGA
CAGCCAGCGACACCCCTTCTACTTCCTCCTCTTGGTCACAGAAGGTAGCGGGCGGCTCAG
GAAGCTCATCAAAATTAAGAAGATTAGCACTGCCTTCACCTGCTGGTGGCAGTGGCTCCT
GAGCCACCTCGTCCAGCAGGGGCACCTCTGCCAGAGGGACCTCAGCACCCGAGGGTGGTG
TGGGGGCCCTAGGCTCAGCCTGGGGTGCAGAGGCCTCCTCCCCATTGCCAGGCCATAGGT
CAATGAGGCTGGCAGCTGCAGGGGTGACAGTGTTGGCAACAGCGGTGTCAGCAGCGGCAG
TGTCGGCTTCAATGGCATCAGCTACCAGGGTGTCAGCTGCAGAGGCTCCAGCCATGGCAG
GCTCTAGAGGGGCAGCCAGGACAGCCTGCTCTGTAGACGCCATGAACATCAAGTCCTCCG
GGGGGCTGCCTCGGCCCTGGGGAGGCTCCGGTGCCTGAGGGGGCTCCTCCACAGGGCCAG
CCCAGGCCTGAGGGGCTGCTTCTCTGGCTTCCTTGCTCGTCTCTTCACTATCCAGGCCAG
GGCTGGGCTCCTGGGTTTCTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGGATCTGGATTTCTTTATTAACAGACATGAGCACG
ACCTGTTACAGAAGTTTGTGCTTTCCAAAAAACAGTTACTGAACGTGAAAAAGGAACCCA
AGCAAAGAGGGAGGAGGTGAAGAGGGACCACCCATAGCCCTGACCTGAATCACGCCTAGG
GCCTCCAGCTTGGGACCTGCCCAGCAGGAGGGGGCAGGAAAGGGCCAGGAAGCTGAGGGG
CCCCAGCTGGGCCTGCTACTTCCTTCAGGCCAGGTGGGGAGGTCAAGAGAAGGGTGGGGA
AGGGGGGTCCCAGGGAACCAGAGCCCACGAGCCGTTTATTGCCATGTTTTAAAATTCGTG
CAAAATATCTGAAGCCCTGGACAGAGAATACAAAGTGATATTTTTCCAAGAAACAGAAAA
CTAGGAAAAGAGGTGGGGGGAACATTTTCCCACCAGAGCATCCCCCCACACAGGCCCCAA
AGCAGGGTGAGGCCTCCACCCCGGCCAGCTGAGTGACCAGGGAGGACTAAGATCTACAAT
CTGGACCGGGCAGGAAGGGGATGGAATTTGCAACAGCGTCTCAACTACCAACGGGAGGAA
AACCGGTCAACTGTACAAGTCTCCTATCAACTTTTAAAAAAAAGAAAAGCTGTAAAAGTC
GGGCCCTGTGGGTAGGGAAGCGGCCAAGTCCCCGGCCAGGGCCGGAGTCCAGAGGGTGCC
AGGCGGAGCTGCTGCAAGTGCAGGCACTGCGGGCCGTCTGGCCAGAGGCCAGCGCAGGTG
TGAGGCCTTGGCGAGGGCAGCCTGAGGACGGGCACCACCGCTAGTCGCCACCCTCGAAGC
CCTCCTCCTCTTCTGGTACTGGGTCTGCATCCCAGCAAGTGATGTCGATTTCTGGAGGCT
TGTTGTAGAACACAGGAGGCGGGGCCTTTGCACACAGCTCTTCCGATTGGGCAAACTCCT
CCTCCTGTGATTGGCTGAAGTACCCCTCACTGGCCTGGGTCCCCTCCTTCTGGGTGGTCT
CGCCATTGGTCAGCAGGTGGGGCTCTGGCTCTGGCTCCAGCTCCGGCTCCGGCTCTGGCT
CCCGATCCGGCTCTAGATCCAGCTCCTCTAGAGCTGAGGGCAGAGTTGGAGCCTGAGGGA
CAGCCAGCGACACCCCTTCTACTTCCTCCTCTTGGTCACAGAAGGTAGCGGGCGGCTCAG
GAAGCTCATCAAAATTAAGAAGATTAGCACTGCCTTCACCTGCTGGTGGCAGTGGCTCCT
GAGCCACCTCGTCCAGCAGGGGCACCTCTGCCAGAGGGACCTCAGCACCCGAGGGTGGTG
TGGGGGCCCTAGGCTCAGCCTGGGGTGCAGAGGCCTCCTCCCCATTGCCAGGCCATAGGT
CAATGAGGCTGGCAGCTGCAGGGGTGACAGTGTTGGCAACAGCGGTGTCAGCAGCGGCAG
TGTCGGCTTCAATGGCATCAGCTACCAGGGTGTCAGCTGCAGAGGCTCCAGCCATGGCAG
GCTCTAGAGGGGCAGCCAGGACAGCCTGCTCTGTAGACGCCATGAACATCAAGTCCTCCG
GGGGGCTGCCTCGGCCCTGGGGAGGCTCCGGTGCCTGAGGGGGCTCCTCCACAGGGCCAG
CCCAGGCCTGAGGGGCTGCTTCTCTGGCTTCCTTGCTCGTCTCTTCACTATCCAGGCCAG
GGCTGGGCTCCTGGGTTTCTTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872992|ref|XP_581692.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872992|ref|XP_581692.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               25-1700, + strand, RNAz p=0.764515
               

               
               152-297, - strand, RNAz p=0.97785
               

               
               417-575, - strand, RNAz p=0.646661
               

               
               690-807, - strand, RNAz p=0.793212
               

               
               1058-1496, - strand, RNAz p=0.997753

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-1700, + strand, RNAz p=0.764515
               

               
               152-297, - strand, RNAz p=0.97785
               

               
               417-575, - strand, RNAz p=0.646661
               

               
               690-807, - strand, RNAz p=0.793212
               

               
               1058-1496, - strand, RNAz p=0.997753

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of NM_004395, -
               

               
               5' of NM_004395, -
               

               
               5' of NM_004395, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004395, -
               

               
               5' of NM_004395, -
               

               
               5' of NM_004395, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-893, gnl|bosTau2|chr7 (21729320-21730200)
               

               
               25-893, gnl|Hg17|chr5 (176816219-176817112)
               

               
               25-893, gnl|Mm7|chr13 (54553909-54554776)
               


               
               1058-1700, gnl|bosTau2|chr7 (21730812-21731457)
               

               
               1058-1700, gnl|Hg17|chr5 (176817704-176818316)
               

               
               1058-1700, gnl|Mm7|chr13 (54555380-54556019)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-893, gnl|bosTau2|chr7 (21729320-21730200)
               

               
               25-893, gnl|Hg17|chr5 (176816219-176817112)
               

               
               25-893, gnl|Mm7|chr13 (54553909-54554776)
               


               
               1058-1700, gnl|bosTau2|chr7 (21730812-21731457)
               

               
               1058-1700, gnl|Hg17|chr5 (176817704-176818316)
               

               
               1058-1700, gnl|Mm7|chr13 (54555380-54556019)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               elu (0.385356)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	25-1700, + strand, RNAz p=0.764515
	152-297, - strand, RNAz p=0.97785
	417-575, - strand, RNAz p=0.646661
	690-807, - strand, RNAz p=0.793212
	1058-1496, - strand, RNAz p=0.997753

	25-893, gnl\|bosTau2\|chr7 (21729320-21730200)
	25-893, gnl\|Hg17\|chr5 (176816219-176817112)
	25-893, gnl\|Mm7\|chr13 (54553909-54554776)

	1058-1700, gnl\|bosTau2\|chr7 (21730812-21731457)
	1058-1700, gnl\|Hg17\|chr5 (176817704-176818316)
	1058-1700, gnl\|Mm7\|chr13 (54555380-54556019)

	elu (0.385356)
	eye (0.341006)
	fce (0.271592)
	ecc (0.23007)
	ece (0.229305)
	fcc (0.197785)
	fhi (0.169578)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	jca (0.11396)