Non-Coding RNA Search

Ss1.1-Pig1-107E10.5

Sequence:


               
               TTAATTAAGACGGGCCGCTGACACGCACGGAGGCCCAAGCCTGCGGCCCGGAGCCGCACT
CAGCAATGGCCAGAGCTTGCGGGTCCTGCACGTGGTGCAGACACTGTACCCCTTCAGCTC
GGTCACCGAGGAGGAGCTTAACTTCGACAAGGGCGAGACGATGGAGGTGATCGAGAAGCC
TGAGAACGATCCTGAATGGTGGCGTTGCCGCAATGCGCGTGGCCAGGTCGGCCTAGTGCC
CAAGAACTACGTGGTGGTGCTGAGCGAGGGCCCAGCCCTGCACGCAGGCTCTGGCCCCAC
AGGGCCCGCTCGTGCGGGCCGGTTTGCAGGCCGGGAGTGGTACTACGGGAACGTGACTCG
CCACCAGGCCGAGTGCGCGCTCAACGCGAGAGGTGTGCAGGGCGACTTCCTCGTCCGCGA
TAGCGAGTCCTCGCCCAGTGACTTCTCCGTGTCTCTCAAAGCATCAGGGAAGAACAAGCA
TTTCAAGGTGCAGCTCGTGGACAATGTCTACTGCATCGGGCAGCGGCGCTTCCACACCAT
GGACGAGCTGGTGGAGCACTACAAGAAGGCGCCCATCTTCACCAGTGAGCACGGGGAGAA
GCTCTACCTCGTCCGAGCGCTGCAGTGACACCACCGGGTGCTCCGCGCTCCCTGAGCCCG
GCCATGCACCCCAGAAGAAGCCCACATCCTGGGCCCTCCTACCAGCCGGCCCCCGGGGTT
CGTCCTGCACCACTCTCTCCGCCTGGTTTCCCTTCTGTCCGGGTCGGTTTGTTTTCCATC
CGCCCCCTTCGGCATCCCAGGCCCCCCCAGCCGGCTCTGGAGGCGGGGAGGGGGCCATGG
GCCCAGGGCTCACCTGTTCCTTCTCCATGGAAACAGCCTTAGTCTGTGGACATCGCTCAC
GCCATGTGGCCCCCCTTCAGGACCCGGGCGCGGTTTGAATGCACCGAAGCTGCCCTTACT
CCTGAGCTACAGCACCCTCAACGGCGGGCCTGGCTCTGGGCGGCACCTGCCGGGGCCCTG
GATCCGGGTGCTGGGTGCTCACACAGCCCCAGACTCCGGGGGGCGACCCCACGCGCTCCT
AGCAATACTGGGCCCCCCGGTGAGACAGGAGGGAAGAAGCTGTCCAGTGCCTTTGGGGCT
GCGCTTGCAATAAAGAAAAGAGGTCCTGGGAAGTCGGCCCACAAAGGCGGGGCCAGAGAC
GTGGAAAGATGGAGGTTTTGGAAATTTCCCCCAGACGTGCCATCTGCATAGTGCTTTTTC
CTCTTGCCCTTCAGCTTGCTTCAATTTCACAGTTATGTATTTAATTCTCAAAGTTATATG
TATCTGTAGCCATTTGTTGACACTAATCCAGATGATTAAGGAGAACAGCTGATCTTTGGG
GGAGGGGCGTGACAGACACTTGACACACACACACACACAAATATATATATATTATTTGCT
TTATGGGGAAATTTTTCAGGGTTTACAAAAGAATATGTGATCGGTAGTGAGAGACACAGA
ATGTTTATGAAGAAATTGCGTTTTCTTTTTTTCTTTACATTTGAACTTCTTTATAGGTGA
AATATATACAGTCTTGAGGTGGCACATTCCTACAGTTGAGGAAGGGGTCTTGGGACCTCC
TAAACTTGTATACTCAGTTTTTTGGATATTGTAATAAAAAAGTATTATGACAAGAAAAAA
AAAAAAAAAAAACTTGGCGAAGCTCTGACTCAGCAGCCTCGACTGAAGACCCGGTGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATTAAGACGGGCCGCTGACACGCACGGAGGCCCAAGCCTGCGGCCCGGAGCCGCACT
CAGCAATGGCCAGAGCTTGCGGGTCCTGCACGTGGTGCAGACACTGTACCCCTTCAGCTC
GGTCACCGAGGAGGAGCTTAACTTCGACAAGGGCGAGACGATGGAGGTGATCGAGAAGCC
TGAGAACGATCCTGAATGGTGGCGTTGCCGCAATGCGCGTGGCCAGGTCGGCCTAGTGCC
CAAGAACTACGTGGTGGTGCTGAGCGAGGGCCCAGCCCTGCACGCAGGCTCTGGCCCCAC
AGGGCCCGCTCGTGCGGGCCGGTTTGCAGGCCGGGAGTGGTACTACGGGAACGTGACTCG
CCACCAGGCCGAGTGCGCGCTCAACGCGAGAGGTGTGCAGGGCGACTTCCTCGTCCGCGA
TAGCGAGTCCTCGCCCAGTGACTTCTCCGTGTCTCTCAAAGCATCAGGGAAGAACAAGCA
TTTCAAGGTGCAGCTCGTGGACAATGTCTACTGCATCGGGCAGCGGCGCTTCCACACCAT
GGACGAGCTGGTGGAGCACTACAAGAAGGCGCCCATCTTCACCAGTGAGCACGGGGAGAA
GCTCTACCTCGTCCGAGCGCTGCAGTGACACCACCGGGTGCTCCGCGCTCCCTGAGCCCG
GCCATGCACCCCAGAAGAAGCCCACATCCTGGGCCCTCCTACCAGCCGGCCCCCGGGGTT
CGTCCTGCACCACTCTCTCCGCCTGGTTTCCCTTCTGTCCGGGTCGGTTTGTTTTCCATC
CGCCCCCTTCGGCATCCCAGGCCCCCCCAGCCGGCTCTGGAGGCGGGGAGGGGGCCATGG
GCCCAGGGCTCACCTGTTCCTTCTCCATGGAAACAGCCTTAGTCTGTGGACATCGCTCAC
GCCATGTGGCCCCCCTTCAGGACCCGGGCGCGGTTTGAATGCACCGAAGCTGCCCTTACT
CCTGAGCTACAGCACCCTCAACGGCGGGCCTGGCTCTGGGCGGCACCTGCCGGGGCCCTG
GATCCGGGTGCTGGGTGCTCACACAGCCCCAGACTCCGGGGGGCGACCCCACGCGCTCCT
AGCAATACTGGGCCCCCCGGTGAGACAGGAGGGAAGAAGCTGTCCAGTGCCTTTGGGGCT
GCGCTTGCAATAAAGAAAAGAGGTCCTGGGAAGTCGGCCCACAAAGGCGGGGCCAGAGAC
GTGGAAAGATGGAGGTTTTGGAAATTTCCCCCAGACGTGCCATCTGCATAGTGCTTTTTC
CTCTTGCCCTTCAGCTTGCTTCAATTTCACAGTTATGTATTTAATTCTCAAAGTTATATG
TATCTGTAGCCATTTGTTGACACTAATCCAGATGATTAAGGAGAACAGCTGATCTTTGGG
GGAGGGGCGTGACAGACACTTGACACACACACACACACAAATATATATATATTATTTGCT
TTATGGGGAAATTTTTCAGGGTTTACAAAAGAATATGTGATCGGTAGTGAGAGACACAGA
ATGTTTATGAAGAAATTGCGTTTTCTTTTTTTCTTTACATTTGAACTTCTTTATAGGTGA
AATATATACAGTCTTGAGGTGGCACATTCCTACAGTTGAGGAAGGGGTCTTGGGACCTCC
TAAACTTGTATACTCAGTTTTTTGGATATTGTAATAAAAAAGTATTATGACAAGAAAAAA
AAAAAAAAAAAACTTGGCGAAGCTCTGACTCAGCAGCCTCGACTGAAGACCCGGTGCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9QW59_9MURI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9QW59_9MURI

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               14-440, gnl|bosTau2|chr11 (36954102-36954528)
               

               
               14-440, gnl|Hg17|chr2 (105956592-105957030)
               

               
               14-440, gnl|Mm7|chr1 (43794538-43794976)
               


               
               727-1425, gnl|bosTau2|chr11 (36967004-36967710)
               

               
               727-1425, gnl|Hg17|chr2 (105968238-105968979)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-440, gnl|bosTau2|chr11 (36954102-36954528)
               

               
               14-440, gnl|Hg17|chr2 (105956592-105957030)
               

               
               14-440, gnl|Mm7|chr1 (43794538-43794976)
               


               
               727-1425, gnl|bosTau2|chr11 (36967004-36967710)
               

               
               727-1425, gnl|Hg17|chr2 (105968238-105968979)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               elu (0.770713)
               

               
               sto (0.539471)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               sto (0.539471)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	14-440, gnl\|bosTau2\|chr11 (36954102-36954528)
	14-440, gnl\|Hg17\|chr2 (105956592-105957030)
	14-440, gnl\|Mm7\|chr1 (43794538-43794976)

	727-1425, gnl\|bosTau2\|chr11 (36967004-36967710)
	727-1425, gnl\|Hg17\|chr2 (105968238-105968979)

	elu (0.770713)
	sto (0.539471)
	pro (0.512033)
	eye (0.511509)
	mgp (0.461361)
	mgm (0.360685)
	mga (0.32041)
	bfe (0.299715)
	jej (0.296765)
	cbe (0.239234)
	mas (0.210305)
	aor (0.195274)
	col (0.195008)
	nep (0.183925)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	csp (0.161186)
	lin (0.145603)
	csk (0.140746)
	sug (0.127291)
	med (0.116252)
	spc (0.113366)