Non-Coding RNA Search

Ss1.1-Pig1-107G17.5

Sequence:


               
               GCATCCGGGACCGCGCTCAGCTCCCGGAGCCCGGCTGCTCTAAGGATGGAGAAGAGGGCT
CGGAGCTCCTCCAGAGAGGCCCATCGGAGGGGCGGCGGGTCCCCGTACAAGGAGAACAAG
AAGCCAAACGCCCAGAAGGGCAGCAGAGGCCGCGGGCGCCGGGAGCAGCCGGCCGTCGGG
CGCGCAGAGAGCCCAGCGGAGCCCCGACCGCCGGCAGCCACCGTGGTGGACGTGGATGAA
GTCCGGGGCTCTGGCGAGGAGGGCACCGAAGTGGTGGCGCTGCTGGAGAGTGAGCGGCCA
GAGGAAGGTACCAAATCTTCCAGTTTGGGGGCCTGTGAGTGGCTTCTTGTCCTCACATCC
CTGCTCTTCATCATCGTGACGTTCCCTTTTTCCATCTGGTTCTGCATACAACTGACTACA
TTTGGTGCCCAAAAAAAGGAACCCCACACACCTGTCATAACTATTCTCCTTTCCTCTCTT
CTAGGCCTTTTCTTCTTTTTGCCCTGCTTGGATACCTACCACAAGGTTGACCTTCGTCTC
CAAACCTTGGAGATACCGTTTCACGAGGTAAGTAAGGCCATGTGGTGGATTTTACTTTCT
CTCTACATTTCCCCTGGCTGAGCTACCAGTTCTAGCTGAGAGAAAAATGACTAATTTTGC
TTAAAAGTAGGAAAGAAAAGGATACGGACTACATCAAATTTTAAAACTCCTATACCTCAA
AGGACACAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCCGGGACCGCGCTCAGCTCCCGGAGCCCGGCTGCTCTAAGGATGGAGAAGAGGGCT
CGGAGCTCCTCCAGAGAGGCCCATCGGAGGGGCGGCGGGTCCCCGTACAAGGAGAACAAG
AAGCCAAACGCCCAGAAGGGCAGCAGAGGCCGCGGGCGCCGGGAGCAGCCGGCCGTCGGG
CGCGCAGAGAGCCCAGCGGAGCCCCGACCGCCGGCAGCCACCGTGGTGGACGTGGATGAA
GTCCGGGGCTCTGGCGAGGAGGGCACCGAAGTGGTGGCGCTGCTGGAGAGTGAGCGGCCA
GAGGAAGGTACCAAATCTTCCAGTTTGGGGGCCTGTGAGTGGCTTCTTGTCCTCACATCC
CTGCTCTTCATCATCGTGACGTTCCCTTTTTCCATCTGGTTCTGCATACAACTGACTACA
TTTGGTGCCCAAAAAAAGGAACCCCACACACCTGTCATAACTATTCTCCTTTCCTCTCTT
CTAGGCCTTTTCTTCTTTTTGCCCTGCTTGGATACCTACCACAAGGTTGACCTTCGTCTC
CAAACCTTGGAGATACCGTTTCACGAGGTAAGTAAGGCCATGTGGTGGATTTTACTTTCT
CTCTACATTTCCCCTGGCTGAGCTACCAGTTCTAGCTGAGAGAAAAATGACTAATTTTGC
TTAAAAGTAGGAAAGAAAAGGATACGGACTACATCAAATTTTAAAACTCCTATACCTCAA
AGGACACAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833903|ref|XP_607714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833903|ref|XP_607714.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-311, - strand, RNAz p=0.688891
               

               
               478-632, - strand, RNAz p=0.928771

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-311, - strand, RNAz p=0.688891
               

               
               478-632, - strand, RNAz p=0.928771

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-311, gnl|bosTau2|chr16 (46507736-46507435)
               

               
               21-311, gnl|Hg17|chr1 (176276712-176276379)
               

               
               21-311, gnl|Mm7|chr1 (156273375-156273672)
               


               
               478-732, gnl|bosTau2|chr16 (46498591-46498326)
               

               
               478-732, gnl|Hg17|chr1 (176260559-176260317)
               

               
               478-732, gnl|Mm7|chr1 (156281284-156281512)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-311, gnl|bosTau2|chr16 (46507736-46507435)
               

               
               21-311, gnl|Hg17|chr1 (176276712-176276379)
               

               
               21-311, gnl|Mm7|chr1 (156273375-156273672)
               


               
               478-732, gnl|bosTau2|chr16 (46498591-46498326)
               

               
               478-732, gnl|Hg17|chr1 (176260559-176260317)
               

               
               478-732, gnl|Mm7|chr1 (156281284-156281512)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	200-311, - strand, RNAz p=0.688891
	478-632, - strand, RNAz p=0.928771

	21-311, gnl\|bosTau2\|chr16 (46507736-46507435)
	21-311, gnl\|Hg17\|chr1 (176276712-176276379)
	21-311, gnl\|Mm7\|chr1 (156273375-156273672)

	478-732, gnl\|bosTau2\|chr16 (46498591-46498326)
	478-732, gnl\|Hg17\|chr1 (176260559-176260317)
	478-732, gnl\|Mm7\|chr1 (156281284-156281512)