Non-Coding RNA Search

Ss1.1-Pig1-107H06.5

Sequence:


               
               GTAGAACTACAAATGGGCATCTGGATCATTAAAGTATGTCCTCGTTTAGAAACTTTGGCA
GTCCTAGTATTCAAACTGTTTTGAGGATCAAATTTTTGGTTGCCCTTAAGATATTTTGTC
ACAGTTTTTATGTTTGCTATACTGCCGAATAAATTTATATCTCCCAAAGTTGAGATGCAA
CAACTAAGTAAAGCAACTATGTATGCTTTGTTTGTGAATTGTTTCACAGACTGATACATT
TTGTAAATAATTCTTCCAAAATCATGTATTTAAAGCAGTTTTGCCATATACATTATGTAA
AAAGGTGATTTTTTAAATCAGTTTTTAAATTCATGTTTGTACATTGAAAGGGGTTTTTTT
TAAACCGCCTTTTCTGTGTTTAATATGCTGTAGAGTAATAACCTAGATGCTCTAGACTGT
ATATCAGGATCTGATTTACAAGAACAAAGTCAGAGCCAAACACTAGTGATGGCATAGCAT
TACTGAAATCATTGTTTCTTAATTTCATTTTACCACATTGTGAACTTGTGATTCAGATTC
CTTCCATTTTCGCAGAGAATTAAAAACAAAAAAGTACTCTTGTAAAATGCACTTTTCTGT
CTTTTCTTTGCAAAGCAGAAGTATTTCAATGTAAAATAAAAATGGAGCTCAGTGGGCAGT
ATTAATAAAGGCCATGTTTTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGAACTACAAATGGGCATCTGGATCATTAAAGTATGTCCTCGTTTAGAAACTTTGGCA
GTCCTAGTATTCAAACTGTTTTGAGGATCAAATTTTTGGTTGCCCTTAAGATATTTTGTC
ACAGTTTTTATGTTTGCTATACTGCCGAATAAATTTATATCTCCCAAAGTTGAGATGCAA
CAACTAAGTAAAGCAACTATGTATGCTTTGTTTGTGAATTGTTTCACAGACTGATACATT
TTGTAAATAATTCTTCCAAAATCATGTATTTAAAGCAGTTTTGCCATATACATTATGTAA
AAAGGTGATTTTTTAAATCAGTTTTTAAATTCATGTTTGTACATTGAAAGGGGTTTTTTT
TAAACCGCCTTTTCTGTGTTTAATATGCTGTAGAGTAATAACCTAGATGCTCTAGACTGT
ATATCAGGATCTGATTTACAAGAACAAAGTCAGAGCCAAACACTAGTGATGGCATAGCAT
TACTGAAATCATTGTTTCTTAATTTCATTTTACCACATTGTGAACTTGTGATTCAGATTC
CTTCCATTTTCGCAGAGAATTAAAAACAAAAAAGTACTCTTGTAAAATGCACTTTTCTGT
CTTTTCTTTGCAAAGCAGAAGTATTTCAATGTAAAATAAAAATGGAGCTCAGTGGGCAGT
ATTAATAAAGGCCATGTTTTAAAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               38-428, - strand, RNAz p=0.846451
               

               
               133-242, - strand, RNAz p=0.576668
               

               
               283-668, + strand, RNAz p=0.997826

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-428, - strand, RNAz p=0.846451
               

               
               133-242, - strand, RNAz p=0.576668
               

               
               283-668, + strand, RNAz p=0.997826

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               332-406, + strand, RNAmicro p=0.966268

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               332-406, + strand, RNAmicro p=0.966268

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               285-668, DB553054 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB553054.1|), blast E-value=3.00018e-42, identity=98.95% 
               

               
               285-668, 7h90d04.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE 
(gb|BF063917.1|), blast E-value=3.00018e-42, identity=98.95% 
               

               
               283-561, UMC-pd6end2-006-b06 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992703.1|), blast E-value=0, identity=97.13% 
               

               
               283-559, 1257453 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN516955.1|), 
blast E-value=0, identity=96.04% 
               

               
               283-559, 1262329 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN519661.1|), 
blast E-value=0, identity=96.04% 
               

               
               283-668, 1405314 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN743037.1|), 
blast E-value=0, identity=94.06%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               285-668, DB553054 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB553054.1|), blast E-value=3.00018e-42, identity=98.95% 
               

               
               285-668, 7h90d04.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE 
(gb|BF063917.1|), blast E-value=3.00018e-42, identity=98.95% 
               

               
               283-561, UMC-pd6end2-006-b06 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992703.1|), blast E-value=0, identity=97.13% 
               

               
               283-559, 1257453 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN516955.1|), 
blast E-value=0, identity=96.04% 
               

               
               283-559, 1262329 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN519661.1|), 
blast E-value=0, identity=96.04% 
               

               
               283-668, 1405314 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN743037.1|), 
blast E-value=0, identity=94.06%

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-684, gnl|bosTau2|chr10 (48003535-48002849)
               

               
               1-684, gnl|canFam2|chr8 (36759594-36760056)
               

               
               1-684, gnl|echTel1|scaffold_288426 (35709-35250)
               

               
               1-684, gnl|galGal2|chr5 (51965251-51964801)
               

               
               1-684, gnl|hg17|chr14 (57909471-57909938)
               

               
               1-684, gnl|Hg17|chr14 (57909520-57910201)
               

               
               1-684, gnl|mm7|chr12 (69042498-69042962)
               

               
               1-684, gnl|Mm7|chr12 (69042545-69043190)
               

               
               1-684, gnl|monDom2|scaffold_8 (70421504-70421970)
               

               
               1-684, gnl|oryCun1|scaffold_14834 (2829-2379)
               

               
               1-684, gnl|panTro1|chr15 (57467862-57468329)
               

               
               1-684, gnl|rheMac2|chr7 (121390150-121390618)
               

               
               1-684, gnl|rn3|chr6 (93205132-93205589)
               

               
               1-684, gnl|xenTro1|scaffold_33 (1243255-1242850)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr10 (48003535-48002849)
               

               
               1-684, gnl|canFam2|chr8 (36759594-36760056)
               

               
               1-684, gnl|echTel1|scaffold_288426 (35709-35250)
               

               
               1-684, gnl|galGal2|chr5 (51965251-51964801)
               

               
               1-684, gnl|hg17|chr14 (57909471-57909938)
               

               
               1-684, gnl|Hg17|chr14 (57909520-57910201)
               

               
               1-684, gnl|mm7|chr12 (69042498-69042962)
               

               
               1-684, gnl|Mm7|chr12 (69042545-69043190)
               

               
               1-684, gnl|monDom2|scaffold_8 (70421504-70421970)
               

               
               1-684, gnl|oryCun1|scaffold_14834 (2829-2379)
               

               
               1-684, gnl|panTro1|chr15 (57467862-57468329)
               

               
               1-684, gnl|rheMac2|chr7 (121390150-121390618)
               

               
               1-684, gnl|rn3|chr6 (93205132-93205589)
               

               
               1-684, gnl|xenTro1|scaffold_33 (1243255-1242850)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	38-428, - strand, RNAz p=0.846451
	133-242, - strand, RNAz p=0.576668
	283-668, + strand, RNAz p=0.997826

	285-668, DB553054 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB553054.1\|), blast E-value=3.00018e-42, identity=98.95%
	285-668, 7h90d04.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE (gb\|BF063917.1\|), blast E-value=3.00018e-42, identity=98.95%
	283-561, UMC-pd6end2-006-b06 Endometrium gilt D6 of estrous cycle pd6end Sus (gb\|CO992703.1\|), blast E-value=0, identity=97.13%
	283-559, 1257453 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN516955.1\|), blast E-value=0, identity=96.04%
	283-559, 1262329 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN519661.1\|), blast E-value=0, identity=96.04%
	283-668, 1405314 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN743037.1\|), blast E-value=0, identity=94.06%

	1-684, gnl\|bosTau2\|chr10 (48003535-48002849)
	1-684, gnl\|canFam2\|chr8 (36759594-36760056)
	1-684, gnl\|echTel1\|scaffold_288426 (35709-35250)
	1-684, gnl\|galGal2\|chr5 (51965251-51964801)
	1-684, gnl\|hg17\|chr14 (57909471-57909938)
	1-684, gnl\|Hg17\|chr14 (57909520-57910201)
	1-684, gnl\|mm7\|chr12 (69042498-69042962)
	1-684, gnl\|Mm7\|chr12 (69042545-69043190)
	1-684, gnl\|monDom2\|scaffold_8 (70421504-70421970)
	1-684, gnl\|oryCun1\|scaffold_14834 (2829-2379)
	1-684, gnl\|panTro1\|chr15 (57467862-57468329)
	1-684, gnl\|rheMac2\|chr7 (121390150-121390618)
	1-684, gnl\|rn3\|chr6 (93205132-93205589)
	1-684, gnl\|xenTro1\|scaffold_33 (1243255-1242850)

	rec (0.17307)
	fco (0.157208)
	isp (0.150376)
	hlv (0.139256)
	lyg (0.133103)
	ret (0.128733)