Non-Coding RNA Search

Ss1.1-Pig1-107L06.5

Sequence:


               
               GGCAAGATGGCGGCGCTGGTGCAGCGCGTGGGTTGGGCCACGCGAACATTGCTGCTGGTA
ACGCGAGCTCGGGACCTCGGCGCGCGGCGCGGGGTCCGGGCGCTGCGGCGGAGCCCGGTG
AAAGTGCTGTTTCCATCTGGTCAGGTCGTGGAGCGGAAGCCCGGGCCCGGGAAGCAGCCC
CGGAAGGCGGCTGCGGAGGCCAGTTCCCGCGAGCAGCGACTGAATCAGCCGCTTCAGGTT
CCCGCATCCCAGACGCCCAGCACCTGGGAAGAGTCGGGGCTTCGCTACGATAAGGCTTTC
CCCGGGGACAAAAGGCTGAGTAGTGTGATGACAATAGTTAAATCCAGGCCATTTCGGGAA
AAGCAAGGGAAGATCCTGCTGGAAGGTCGTAGGCTGATTGCAGACGCTCTCAAGGCTGGT
GCTGTGCCAAAAATTTTCTTCTTCAGCCGTCTAGAATACATAAAGGAGCTACCCATTGAG
AAACTTAAAGGTGTTAGCCTCATTAAGGTGAAGTTTGAGGATATCAAGGATTGGTCCGAC
CTAGTAACACCACAAGGAATCATGGGGATTTTTGCCAAACCTGACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGATGGCGGCGCTGGTGCAGCGCGTGGGTTGGGCCACGCGAACATTGCTGCTGGTA
ACGCGAGCTCGGGACCTCGGCGCGCGGCGCGGGGTCCGGGCGCTGCGGCGGAGCCCGGTG
AAAGTGCTGTTTCCATCTGGTCAGGTCGTGGAGCGGAAGCCCGGGCCCGGGAAGCAGCCC
CGGAAGGCGGCTGCGGAGGCCAGTTCCCGCGAGCAGCGACTGAATCAGCCGCTTCAGGTT
CCCGCATCCCAGACGCCCAGCACCTGGGAAGAGTCGGGGCTTCGCTACGATAAGGCTTTC
CCCGGGGACAAAAGGCTGAGTAGTGTGATGACAATAGTTAAATCCAGGCCATTTCGGGAA
AAGCAAGGGAAGATCCTGCTGGAAGGTCGTAGGCTGATTGCAGACGCTCTCAAGGCTGGT
GCTGTGCCAAAAATTTTCTTCTTCAGCCGTCTAGAATACATAAAGGAGCTACCCATTGAG
AAACTTAAAGGTGTTAGCCTCATTAAGGTGAAGTTTGAGGATATCAAGGATTGGTCCGAC
CTAGTAACACCACAAGGAATCATGGGGATTTTTGCCAAACCTGACCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34872789|ref|XP_340846.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34872789|ref|XP_340846.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.805435

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.805435

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-320, gnl|bosTau2|chr19 (16519382-16519063)
               

               
               1-320, gnl|Hg17|chr17 (632363-632682)
               

               
               1-320, gnl|Mm7|chr11 (76325341-76325660)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-320, gnl|bosTau2|chr19 (16519382-16519063)
               

               
               1-320, gnl|Hg17|chr17 (632363-632682)
               

               
               1-320, gnl|Mm7|chr11 (76325341-76325660)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-320, gnl\|bosTau2\|chr19 (16519382-16519063)
	1-320, gnl\|Hg17\|chr17 (632363-632682)
	1-320, gnl\|Mm7\|chr11 (76325341-76325660)