Non-Coding RNA Search

Ss1.1-Pig1-107O08.5

Sequence:


               
               AAAAATCTCTTATAAATTGTACCCGAAAAGCCTGAATGGAGCTATCCATGCCCCCACCTC
AGATCTATGTGAGAAAAAACTCTGGCCATTATCAAACCAGATATTGTTGACAAAGAGGAA
GAGATACAAGATATTATTCTCAGATCTGGATTCACCATTGTTCAGAGAAGAAAACTTCAT
CTCAGCCCTGAGCACTGTAGTAACTTTTATGTAGAACAGTATGGGAAAATGTTTTTCCCC
AATTTAACAGCCTACATGAGTTCTGGACCACTTGTTGCCATGGTATTAGCTAGACATAAA
GCCATCTCTTACTGGAAAGAACTTTTGGGACCAAGTAATAGCTTAATAGCTAAGGAGACA
CACCCAGACAGTCTAAGGGCAATTTATGGCACAGACGAGCTAAGGAATGCACTTCATGGG
AGTAATGATTTTGCTGCAGCAGAAAGAGAAATTCGATTTATGTTTCCGGCAGTGATCACT
GAGCCCATTCCAGTTGGACAAGCTGCAAAGGACTATTTAAATTTGTACGTAATACCAACT
CTGCTTGAAGGACTTACAGAGCTTTGTAAGCAAAAACCAGCAGATCCTTTAATTTGGCTA
GCTGATTGGCTGCTGAAAAATAATCCCAACAAACCTAAACTTTGTCATCATCCAATTGTA
GAAGAATCTCATTAAAGCCCTTGAAGAACAATTCACGAACTCTCTTACTATAAAAGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATCTCTTATAAATTGTACCCGAAAAGCCTGAATGGAGCTATCCATGCCCCCACCTC
AGATCTATGTGAGAAAAAACTCTGGCCATTATCAAACCAGATATTGTTGACAAAGAGGAA
GAGATACAAGATATTATTCTCAGATCTGGATTCACCATTGTTCAGAGAAGAAAACTTCAT
CTCAGCCCTGAGCACTGTAGTAACTTTTATGTAGAACAGTATGGGAAAATGTTTTTCCCC
AATTTAACAGCCTACATGAGTTCTGGACCACTTGTTGCCATGGTATTAGCTAGACATAAA
GCCATCTCTTACTGGAAAGAACTTTTGGGACCAAGTAATAGCTTAATAGCTAAGGAGACA
CACCCAGACAGTCTAAGGGCAATTTATGGCACAGACGAGCTAAGGAATGCACTTCATGGG
AGTAATGATTTTGCTGCAGCAGAAAGAGAAATTCGATTTATGTTTCCGGCAGTGATCACT
GAGCCCATTCCAGTTGGACAAGCTGCAAAGGACTATTTAAATTTGTACGTAATACCAACT
CTGCTTGAAGGACTTACAGAGCTTTGTAAGCAAAAACCAGCAGATCCTTTAATTTGGCTA
GCTGATTGGCTGCTGAAAAATAATCCCAACAAACCTAAACTTTGTCATCATCCAATTGTA
GAAGAATCTCATTAAAGCCCTTGAAGAACAATTCACGAACTCTCTTACTATAAAAGGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61829223|ref|XP_595969.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61829223|ref|XP_595969.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               161-371, gnl|bosTau2|chr7 (34685278-34685068)
               

               
               161-371, gnl|Hg17|chr5 (137493061-137492851)
               

               
               161-371, gnl|Mm7|chr18 (34947131-34946921)
               


               
               469-590, gnl|bosTau2|chr7 (34677455-34677334)
               

               
               469-590, gnl|Hg17|chr5 (137482528-137482407)
               

               
               469-590, gnl|Mm7|chr18 (34942623-34942502)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-371, gnl|bosTau2|chr7 (34685278-34685068)
               

               
               161-371, gnl|Hg17|chr5 (137493061-137492851)
               

               
               161-371, gnl|Mm7|chr18 (34947131-34946921)
               


               
               469-590, gnl|bosTau2|chr7 (34677455-34677334)
               

               
               469-590, gnl|Hg17|chr5 (137482528-137482407)
               

               
               469-590, gnl|Mm7|chr18 (34942623-34942502)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               tra (0.123092)

	161-371, gnl\|bosTau2\|chr7 (34685278-34685068)
	161-371, gnl\|Hg17\|chr5 (137493061-137492851)
	161-371, gnl\|Mm7\|chr18 (34947131-34946921)

	469-590, gnl\|bosTau2\|chr7 (34677455-34677334)
	469-590, gnl\|Hg17\|chr5 (137482528-137482407)
	469-590, gnl\|Mm7\|chr18 (34942623-34942502)