Ss1.1-Pig1-107P15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCCTCGGTCGCGATGGGGGCGCAGGACCGGCCGCAGTGCCACTTCGACATCGAGATC AACCGAGAGCCGGTTGGTCGCATTATGTTTCAGCTCTTCTCAGATATATGCCCAAAAACA TGCAAAAACTTCCTTTGCCTATGCTCAGGGGAAAAAGGCCTTGGGAAAACAACTGGGAAG AAGTTATGTTATAAAGGTTCTACATTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGT GGGGACTTCAGTGAAGGTAATGGAAAAGGTGGAGAATCGATTTATGGTGGATATTTTAAA GAGAATGTGGTCTTTTGCAAAATGAAAAGAAGCCTGTTCCCAAGATGAAAACTTTATTCT CAAACATGACAGAGCGTTCCTTTTGAACATCTGGTTTTTGCCATCTTCTTTGTGTTGATG TTTGTTACACAGTACCACAAAACCTGCTCCGCACCTGGATGGGGTGCATGTTGTCTTTGG ACTAGTTATTTCTGGTTTTGAAGTAATCGAACAAATTGAAAATCTGAAAACTGATGCTGC AAGTAGACCTTATGCAGATGTGCGAGTTATTGACTGTGGGGTGCTTGCCACGAAATCAAC AAAAGACGTTTTTGAGAAAAAAAAGNAGAAACCAACTCATTCAGAAGTCTCGGATTCCTC TTCCAATTCCTCTTCCTCTTNAGAATCATCCTCAGAGAGTGAAATTGAACATGAGAGAAG CAGAAGAAGGAAACATAAGAGGAGGCCAAAAGTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCCTCGGTCGCGATGGGGGCGCAGGACCGGCCGCAGTGCCACTTCGACATCGAGATC AACCGAGAGCCGGTTGGTCGCATTATGTTTCAGCTCTTCTCAGATATATGCCCAAAAACA TGCAAAAACTTCCTTTGCCTATGCTCAGGGGAAAAAGGCCTTGGGAAAACAACTGGGAAG AAGTTATGTTATAAAGGTTCTACATTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGT GGGGACTTCAGTGAAGGTAATGGAAAAGGTGGAGAATCGATTTATGGTGGATATTTTAAA GAGAATGTGGTCTTTTGCAAAATGAAAAGAAGCCTGTTCCCAAGATGAAAACTTTATTCT CAAACATGACAGAGCGTTCCTTTTGAACATCTGGTTTTTGCCATCTTCTTTGTGTTGATG TTTGTTACACAGTACCACAAAACCTGCTCCGCACCTGGATGGGGTGCATGTTGTCTTTGG ACTAGTTATTTCTGGTTTTGAAGTAATCGAACAAATTGAAAATCTGAAAACTGATGCTGC AAGTAGACCTTATGCAGATGTGCGAGTTATTGACTGTGGGGTGCTTGCCACGAAATCAAC AAAAGACGTTTTTGAGAAAAAAAAGNAGAAACCAACTCATTCAGAAGTCTCGGATTCCTC TTCCAATTCCTCTTCCTCTTNAGAATCATCCTCAGAGAGTGAAATTGAACATGAGAGAAG CAGAAGAAGGAAACATAAGAGGAGGCCAAAAGTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 608-756, - strand, RNAz p=0.996195 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 608-756, - strand, RNAz p=0.996195 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 59-308, gnl|bosTau2|chr6 (42016798-42016543) | |
| 59-308, gnl|Hg17|chr5 (154851135-154851382) | |
| 59-308, gnl|Mm7|chr2 (69662805-69664847) | |
| 146-270, gnl|bosTau2|chr22 (7431784-7431660) | |
| 146-270, gnl|canFam2|chr23 (14791814-14791939) | |
| 146-270, gnl|danRer3|chr24 (9617766-9617644) | |
| 146-270, gnl|dasNov1|scaffold_82398 (8544-8646) | |
| 146-270, gnl|echTel1|scaffold_323434 (800-925) | |
| 146-270, gnl|fr1|chrUn (122678666-122678550) | |
| 146-270, gnl|galGal2|chr2 (1503038-1503160) | |
| 146-270, gnl|hg17|chr3 (42635511-42635638) | |
| 146-270, gnl|Hg17|chr3 (42635513-42635637) | |
| 146-270, gnl|loxAfr1|scaffold_20550 (34738-34617) | |
| 146-270, gnl|mm7|chr9 (121430678-121430803) | |
| 146-270, gnl|Mm7|chr9 (121430678-121430802) | |
| 146-270, gnl|monDom2|scaffold_5 (77716160-77716285) | |
| 146-270, gnl|oryCun1|scaffold_212685 (22408-22283) | |
| 146-270, gnl|panTro1|chr2 (43837322-43837447) | |
| 146-270, gnl|rheMac2|chr2 (93953139-93953014) | |
| 146-270, gnl|rn3|chr3 (51773039-51773164) | |
| 146-270, gnl|tetNig1|chr6 (3078572-3078688) | |
| 146-270, gnl|xenTro1|scaffold_451 (176686-176800) | |
| 608-756, gnl|bosTau2|chr22 (7418353-7418205) | |
| 608-756, gnl|Hg17|chr3 (42649096-42649244) | |
| 608-756, gnl|Mm7|chr9 (121444667-121444815) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-308, gnl|bosTau2|chr6 (42016798-42016543) | |
| 59-308, gnl|Hg17|chr5 (154851135-154851382) | |
| 59-308, gnl|Mm7|chr2 (69662805-69664847) | |
| 146-270, gnl|bosTau2|chr22 (7431784-7431660) | |
| 146-270, gnl|canFam2|chr23 (14791814-14791939) | |
| 146-270, gnl|danRer3|chr24 (9617766-9617644) | |
| 146-270, gnl|dasNov1|scaffold_82398 (8544-8646) | |
| 146-270, gnl|echTel1|scaffold_323434 (800-925) | |
| 146-270, gnl|fr1|chrUn (122678666-122678550) | |
| 146-270, gnl|galGal2|chr2 (1503038-1503160) | |
| 146-270, gnl|hg17|chr3 (42635511-42635638) | |
| 146-270, gnl|Hg17|chr3 (42635513-42635637) | |
| 146-270, gnl|loxAfr1|scaffold_20550 (34738-34617) | |
| 146-270, gnl|mm7|chr9 (121430678-121430803) | |
| 146-270, gnl|Mm7|chr9 (121430678-121430802) | |
| 146-270, gnl|monDom2|scaffold_5 (77716160-77716285) | |
| 146-270, gnl|oryCun1|scaffold_212685 (22408-22283) | |
| 146-270, gnl|panTro1|chr2 (43837322-43837447) | |
| 146-270, gnl|rheMac2|chr2 (93953139-93953014) | |
| 146-270, gnl|rn3|chr3 (51773039-51773164) | |
| 146-270, gnl|tetNig1|chr6 (3078572-3078688) | |
| 146-270, gnl|xenTro1|scaffold_451 (176686-176800) | |
| 608-756, gnl|bosTau2|chr22 (7418353-7418205) | |
| 608-756, gnl|Hg17|chr3 (42649096-42649244) | |
| 608-756, gnl|Mm7|chr9 (121444667-121444815) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |