Non-Coding RNA Search

Ss1.1-Pig1-107P18.5

Sequence:


               
               CCGCTGCACCTGGCGGCCGAACGCAACAACGACGAGGTGCTCGAGGCTCTGTTGAACGCG
CGCTTCGACGTGAACGCGCCGCTGGCACCCGAGCGCGCGCGCCTCTACGAGGACCGGCGC
AGTTCCGCGCTCTACTTCGCGGTGGTCAACAACAACGTGTATGCCACCGAGCTGCTGCTG
CTCGCCGGCGCCGACCCCAACCGCGATGTCATCAACCCCCTACTGGTGGCCATCCGCCAC
GGCTGCCTGCGCACCATGCAGCTGCTGCTGGACCACGGCGCCAACATCGACGCCTACATC
ACCACGCACCCCACCGCCTTCCCCGCCACCATCATGTTCGCCATGAAGTGCCTGTCGCTG
CTCAAATTCCTCATGGACCTCGGCTGCAACGGCGAGCCCTGCTTCTCGTGCCTATACGGC
AACGGCCCGCACCCGCCTCCCCCGCCGCCCTCCAACAGGTTCAATGACACGCCCGCCACG
GATAAGCCGCCCGGCGTGGTCCAGTTCTGCGAGATCCTGTCTGCCCCGGAGGTGAGCCGC
TGGGCGGGGCCCATCATCGACGTCCTCCTGGACTACGTGGGCAACGTGCAGCTCTGCTCG
CGGCTGAAGGAGCACATCGACAGCTTCGAGGACTGGGCTGTCATCAAGGAGAAGGCAGAA
CCTCCGAGACCTCTGGCTCACCTCTGCCGGCTGCAGGTTCGAAAGGCCATTGGAAAATAC
CGTATAAAACTCCTGGACACATTGCCACTGCCAGGCAGGCTGATAAGATACCTGAAGTAC
GAGAACACCCAGTAACCGGGCCACGCGGGAAGGAGCGGCTCCTCCGACGGTTCCACTGAG
TCTCAGGACAGCGGTGTCCCCAAAGCTAAGGGCACCTGGTGACAGATGAGGCCGGGGGCT
GCCTCCCTCTCAGCTGGGGCTGCTGCTGTGACCTCACCAGTCTCTGGGCCAGTGCTTTGC
CCAGAGCGGAAGACAGATGTATCAAGGAGGAGAAAACCCACATTAATTCTCATATGAATG
AGATCCCAGGGCGTCTCTGCCATCGGGAATTGCAGAAAGCTGCATTCCTGGGGCCGGGGC
CCCGGGGCCAGGGCAGAACTTAGGGTGGTCTGGGGAGAGCAGAGCCAGCCAGGAAGCCCT
GGCCCCAACTCTGAGCTGTGGCTGGAGAACTTTCCTGGACAACCTCACTGCAGGGCCCCC
ATGTCCCTCCCTCTTTGCTCTGTGAAACTCTCCTCTTGACTCTGAGCTTTCTCCCCAAAG
CCGTGGCCCAAGGGGGTGGGGTGGGGAGACCTCAGCCCAGAGGGCTTCCTTAGGTACAAT
AAATGTCGCACAGATGGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTGCACCTGGCGGCCGAACGCAACAACGACGAGGTGCTCGAGGCTCTGTTGAACGCG
CGCTTCGACGTGAACGCGCCGCTGGCACCCGAGCGCGCGCGCCTCTACGAGGACCGGCGC
AGTTCCGCGCTCTACTTCGCGGTGGTCAACAACAACGTGTATGCCACCGAGCTGCTGCTG
CTCGCCGGCGCCGACCCCAACCGCGATGTCATCAACCCCCTACTGGTGGCCATCCGCCAC
GGCTGCCTGCGCACCATGCAGCTGCTGCTGGACCACGGCGCCAACATCGACGCCTACATC
ACCACGCACCCCACCGCCTTCCCCGCCACCATCATGTTCGCCATGAAGTGCCTGTCGCTG
CTCAAATTCCTCATGGACCTCGGCTGCAACGGCGAGCCCTGCTTCTCGTGCCTATACGGC
AACGGCCCGCACCCGCCTCCCCCGCCGCCCTCCAACAGGTTCAATGACACGCCCGCCACG
GATAAGCCGCCCGGCGTGGTCCAGTTCTGCGAGATCCTGTCTGCCCCGGAGGTGAGCCGC
TGGGCGGGGCCCATCATCGACGTCCTCCTGGACTACGTGGGCAACGTGCAGCTCTGCTCG
CGGCTGAAGGAGCACATCGACAGCTTCGAGGACTGGGCTGTCATCAAGGAGAAGGCAGAA
CCTCCGAGACCTCTGGCTCACCTCTGCCGGCTGCAGGTTCGAAAGGCCATTGGAAAATAC
CGTATAAAACTCCTGGACACATTGCCACTGCCAGGCAGGCTGATAAGATACCTGAAGTAC
GAGAACACCCAGTAACCGGGCCACGCGGGAAGGAGCGGCTCCTCCGACGGTTCCACTGAG
TCTCAGGACAGCGGTGTCCCCAAAGCTAAGGGCACCTGGTGACAGATGAGGCCGGGGGCT
GCCTCCCTCTCAGCTGGGGCTGCTGCTGTGACCTCACCAGTCTCTGGGCCAGTGCTTTGC
CCAGAGCGGAAGACAGATGTATCAAGGAGGAGAAAACCCACATTAATTCTCATATGAATG
AGATCCCAGGGCGTCTCTGCCATCGGGAATTGCAGAAAGCTGCATTCCTGGGGCCGGGGC
CCCGGGGCCAGGGCAGAACTTAGGGTGGTCTGGGGAGAGCAGAGCCAGCCAGGAAGCCCT
GGCCCCAACTCTGAGCTGTGGCTGGAGAACTTTCCTGGACAACCTCACTGCAGGGCCCCC
ATGTCCCTCCCTCTTTGCTCTGTGAAACTCTCCTCTTGACTCTGAGCTTTCTCCCCAAAG
CCGTGGCCCAAGGGGGTGGGGTGGGGAGACCTCAGCCCAGAGGGCTTCCTTAGGTACAAT
AAATGTCGCACAGATGGCAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12834310|dbj|BAB22862.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834310|dbj|BAB22862.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-439, - strand, RNAz p=0.513053
               

               
               922-1174, + strand, RNAz p=0.999617

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-439, - strand, RNAz p=0.513053
               

               
               922-1174, + strand, RNAz p=0.999617

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-504, gnl|bosTau2|chr21 (37568376-37568879)
               

               
               1-504, gnl|Hg17|chr14 (93475710-93475207)
               

               
               1-504, gnl|Mm7|chr12 (100821216-100820716)
               


               
               656-913, gnl|bosTau2|chr21 (37575196-37575456)
               

               
               656-913, gnl|Hg17|chr14 (93470894-93470633)
               

               
               656-913, gnl|Mm7|chr12 (100817340-100817100)
               


               
               922-1174, gnl|bosTau2|chr21 (37575441-37575698)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr21 (37568376-37568879)
               

               
               1-504, gnl|Hg17|chr14 (93475710-93475207)
               

               
               1-504, gnl|Mm7|chr12 (100821216-100820716)
               


               
               656-913, gnl|bosTau2|chr21 (37575196-37575456)
               

               
               656-913, gnl|Hg17|chr14 (93470894-93470633)
               

               
               656-913, gnl|Mm7|chr12 (100817340-100817100)
               


               
               922-1174, gnl|bosTau2|chr21 (37575441-37575698)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nms (0.427716)
               

               
               fce (0.271592)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               fce (0.271592)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	320-439, - strand, RNAz p=0.513053
	922-1174, + strand, RNAz p=0.999617

	1-504, gnl\|bosTau2\|chr21 (37568376-37568879)
	1-504, gnl\|Hg17\|chr14 (93475710-93475207)
	1-504, gnl\|Mm7\|chr12 (100821216-100820716)

	656-913, gnl\|bosTau2\|chr21 (37575196-37575456)
	656-913, gnl\|Hg17\|chr14 (93470894-93470633)
	656-913, gnl\|Mm7\|chr12 (100817340-100817100)

	922-1174, gnl\|bosTau2\|chr21 (37575441-37575698)

	nms (0.427716)
	fce (0.271592)
	ton (0.1755)
	fhi (0.169578)
	nje (0.16592)
	hlv (0.139256)
	ese (0.126502)
	eru (0.120048)