Non-Coding RNA Search

Ss1.1-Pig1-108B06.5

Sequence:


               
               GTGGTTATGTGGCTGGGCGGCCGCTTGTGGCTCCCGGTTCTTAGGCAAGTGTGCTCCAAC
CTCCGGCGTCTCACCTTTGCCAGGACTTGGGGTGACCGCAGGGACCCCATGGCGGAAACA
CTCTCGACCCGGGCCGAGGCCGCGGGCGGGCTGGAGGCCCCGGCTCAGCAAAACGGAGTT
GCGGGTGGCGAAGCTAGGGAACCGCAAGAGAGCCTGGAGCCTGCGGGCCCTGGAGTGGAG
CTGGCCCCGGGAGACGCGAAGCAGGCCTCCGAGATCGAGGAGCAGGCCCCGGTCGTAGCC
CCCGGCCCAGGCAAGCGGAAGAAGCGGCGGGGCGCAACCGGAGAGCGTATCGTGCCGCCC
CCGAAGAAGCGACGGGCAGGGGTTAGCTTCAGCGATGAGCACTTTGCCGAGACCAGCTAC
TATTTCGAGGGCGGCCTGCGCAAAGTGCGGCCCTACTATTTTGACTTTCAGACTTACTGC
AAAGGCCGCTGGGTGGGCCACAGCTTGCTGCACGTCTTCAGCACCGAGTTCCGAGCCCAG
CCCCTGGCCTACTACGAGGCGGCGGTCAGGGCGGGCCGCCTGCACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTTATGTGGCTGGGCGGCCGCTTGTGGCTCCCGGTTCTTAGGCAAGTGTGCTCCAAC
CTCCGGCGTCTCACCTTTGCCAGGACTTGGGGTGACCGCAGGGACCCCATGGCGGAAACA
CTCTCGACCCGGGCCGAGGCCGCGGGCGGGCTGGAGGCCCCGGCTCAGCAAAACGGAGTT
GCGGGTGGCGAAGCTAGGGAACCGCAAGAGAGCCTGGAGCCTGCGGGCCCTGGAGTGGAG
CTGGCCCCGGGAGACGCGAAGCAGGCCTCCGAGATCGAGGAGCAGGCCCCGGTCGTAGCC
CCCGGCCCAGGCAAGCGGAAGAAGCGGCGGGGCGCAACCGGAGAGCGTATCGTGCCGCCC
CCGAAGAAGCGACGGGCAGGGGTTAGCTTCAGCGATGAGCACTTTGCCGAGACCAGCTAC
TATTTCGAGGGCGGCCTGCGCAAAGTGCGGCCCTACTATTTTGACTTTCAGACTTACTGC
AAAGGCCGCTGGGTGGGCCACAGCTTGCTGCACGTCTTCAGCACCGAGTTCCGAGCCCAG
CCCCTGGCCTACTACGAGGCGGCGGTCAGGGCGGGCCGCCTGCACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55641875|ref|XP_510311.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55641875|ref|XP_510311.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-297, + strand, RNAz p=0.983611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-297, + strand, RNAz p=0.983611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-588, gnl|bosTau2|chr10 (27169061-27169652)
               

               
               3-588, gnl|Hg17|chr15 (38648825-38649395)
               

               
               3-588, gnl|Mm7|chr2 (118775669-118776278)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-588, gnl|bosTau2|chr10 (27169061-27169652)
               

               
               3-588, gnl|Hg17|chr15 (38648825-38649395)
               

               
               3-588, gnl|Mm7|chr2 (118775669-118776278)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	3-588, gnl\|bosTau2\|chr10 (27169061-27169652)
	3-588, gnl\|Hg17\|chr15 (38648825-38649395)
	3-588, gnl\|Mm7\|chr2 (118775669-118776278)