Non-Coding RNA Search

Ss1.1-Pig1-108B09.5

Sequence:


               
               GGAAGCTGGAGGGCCGGGTGGCCTCTGACCAGGACCTGAAGCTGTCAGACATGCTGAGAT
ACTACACGCGAGACTCACAGGCAGCCAAGGTGAGAGGTGGCCCCAGGGCAGAGCTTGTAC
CCGGAGGGCAGAGCTTGTACCCGGAGGCCAGTGGGACTGGGGAGGGCGGGCAGGCAGGCA
AGGGCCANGGCCAGGGATCCTGTGCACCTGCCGGCCCCAGGACCTGCTGTACCGGCGGCT
TCGGGCGCTGGCCGACTACGAGAACGCCAGCAAGGCACTGGACAAGGCGCGCACCAGGAA
CCGGGAGGTGCGGGCCGCTGAGAGCCACCAGCAGCTGTGCTGCCAGCGCTTCGAACGCCT
TTCTGACTCAGCCAAGCAGGGTAAGGCCCGCGGCTCTGGAGCCCCTGCCACTGGGCTGCC
CACCCTGCCAGGGTCCCCATGCCTCTCCTCTCCAGAGCTCATGGACTTCAAGTCCCGCCG
CGTCTCCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCTGGAGGGCCGGGTGGCCTCTGACCAGGACCTGAAGCTGTCAGACATGCTGAGAT
ACTACACGCGAGACTCACAGGCAGCCAAGGTGAGAGGTGGCCCCAGGGCAGAGCTTGTAC
CCGGAGGGCAGAGCTTGTACCCGGAGGCCAGTGGGACTGGGGAGGGCGGGCAGGCAGGCA
AGGGCCANGGCCAGGGATCCTGTGCACCTGCCGGCCCCAGGACCTGCTGTACCGGCGGCT
TCGGGCGCTGGCCGACTACGAGAACGCCAGCAAGGCACTGGACAAGGCGCGCACCAGGAA
CCGGGAGGTGCGGGCCGCTGAGAGCCACCAGCAGCTGTGCTGCCAGCGCTTCGAACGCCT
TTCTGACTCAGCCAAGCAGGGTAAGGCCCGCGGCTCTGGAGCCCCTGCCACTGGGCTGCC
CACCCTGCCAGGGTCCCCATGCCTCTCCTCTCCAGAGCTCATGGACTTCAAGTCCCGCCG
CGTCTCCTCCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               123-282, + strand, RNAz p=0.905109
               

               
               366-475, - strand, RNAz p=0.620635

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-282, + strand, RNAz p=0.905109
               

               
               366-475, - strand, RNAz p=0.620635

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               41-232, - strand, RNAmicro p=0.999385
               

               
               404-506, - strand, RNAmicro p=0.9638

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-232, - strand, RNAmicro p=0.999385
               

               
               404-506, - strand, RNAmicro p=0.9638

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-476, gnl|bosTau2|chr29 (30470540-30471029)
               

               
               4-476, gnl|Hg17|chr11 (65376513-65376940)
               

               
               4-476, gnl|Mm7|chr19 (5391207-5390768)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-476, gnl|bosTau2|chr29 (30470540-30471029)
               

               
               4-476, gnl|Hg17|chr11 (65376513-65376940)
               

               
               4-476, gnl|Mm7|chr19 (5391207-5390768)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	123-282, + strand, RNAz p=0.905109
	366-475, - strand, RNAz p=0.620635

	41-232, - strand, RNAmicro p=0.999385
	404-506, - strand, RNAmicro p=0.9638

	4-476, gnl\|bosTau2\|chr29 (30470540-30471029)
	4-476, gnl\|Hg17\|chr11 (65376513-65376940)
	4-476, gnl\|Mm7\|chr19 (5391207-5390768)