Non-Coding RNA Search

Ss1.1-Pig1-108B11.5

Sequence:


               
               GGCCTCAGTGGGATAAGGGTGAGCCGCCGTTGTCGGTCGCTCTTGTTCTCTCCTCATCAT
GTTGGTCCACTTATTTCGGGTTGGGATTCGCGGTGGCCCTGTCCGAGGCAAGCCACTACT
ACCCTTCCGCTTCCAGACATTCTCGGCCGTCAGGTCCTCCGATGGCCGCGCCAGTTCCTG
CCTCCTTGGGGCCGTGGCTCGGCTGCAGTCCCAGCTCCGGGCCCGTCTCCCTCGAGCGCC
CCCAGCTCCCGGCCGGAGCCCCTCTGCCTGGTGCTGGGTTGGGGGGGTCCTCCTGGGCCC
CGTGGTTCTGAGTAAGTGCCCCCGCCTTGGCCTTGTGGCACTGTGTGAGGCAGAAGAGGC
CCCTCCCGCCTCCTCCAGACCCTGTGTCGTGGAGCCCCGCTTTAACTGGAAGCTCTTCTG
GCACTTTCTGCGCCCCCACCTGCTGGTCCTTGGGGCAGCCGTCGTGCTGGCACTGGGTGC
GGCCCTGGTGAATGTGCAAATCCCCCTGCTCCTGGGTCAGCTGGTGGAGATCGTGGCCAA
GTACACAAGGGACCACGTGGGCAGCTTCCTGACCGAGTCCCGGAGCCTCAGCAGCCAGCT
GCTCGCCCTCTATGGCCTCCAGGGCCTGTTGACCTTCGGGTACCTGGTGCTGCTGTCCCG
CATCGGCGAGCACATGGCCGTGGACATGCGGAGGGCGCTCTTCAGCAACCTGCTCCAACA
AGACATTGCTTTCTTTGATGCTAAAAAGACGGGGCAACTGGTGAGCCGATTGACAACTGA
CGTGCAGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCAGTGGGATAAGGGTGAGCCGCCGTTGTCGGTCGCTCTTGTTCTCTCCTCATCAT
GTTGGTCCACTTATTTCGGGTTGGGATTCGCGGTGGCCCTGTCCGAGGCAAGCCACTACT
ACCCTTCCGCTTCCAGACATTCTCGGCCGTCAGGTCCTCCGATGGCCGCGCCAGTTCCTG
CCTCCTTGGGGCCGTGGCTCGGCTGCAGTCCCAGCTCCGGGCCCGTCTCCCTCGAGCGCC
CCCAGCTCCCGGCCGGAGCCCCTCTGCCTGGTGCTGGGTTGGGGGGGTCCTCCTGGGCCC
CGTGGTTCTGAGTAAGTGCCCCCGCCTTGGCCTTGTGGCACTGTGTGAGGCAGAAGAGGC
CCCTCCCGCCTCCTCCAGACCCTGTGTCGTGGAGCCCCGCTTTAACTGGAAGCTCTTCTG
GCACTTTCTGCGCCCCCACCTGCTGGTCCTTGGGGCAGCCGTCGTGCTGGCACTGGGTGC
GGCCCTGGTGAATGTGCAAATCCCCCTGCTCCTGGGTCAGCTGGTGGAGATCGTGGCCAA
GTACACAAGGGACCACGTGGGCAGCTTCCTGACCGAGTCCCGGAGCCTCAGCAGCCAGCT
GCTCGCCCTCTATGGCCTCCAGGGCCTGTTGACCTTCGGGTACCTGGTGCTGCTGTCCCG
CATCGGCGAGCACATGGCCGTGGACATGCGGAGGGCGCTCTTCAGCAACCTGCTCCAACA
AGACATTGCTTTCTTTGATGCTAAAAAGACGGGGCAACTGGTGAGCCGATTGACAACTGA
CGTGCAGGAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZRM3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZRM3_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               140-469, gnl|bosTau2|chr4 (64559875-64559546)
               

               
               140-469, gnl|canFam2|chr16 (18034536-18034813)
               

               
               140-469, gnl|dasNov1|scaffold_41430 (51063-51352)
               

               
               140-469, gnl|echTel1|scaffold_275846 (4092-3803)
               

               
               140-469, gnl|hg17|chr7 (150168324-150168601)
               

               
               140-469, gnl|Hg17|chr7 (150168326-150168655)
               

               
               140-469, gnl|loxAfr1|scaffold_129402 (1429-1709)
               

               
               140-469, gnl|mm7|chr5 (23440390-23440664)
               

               
               140-469, gnl|Mm7|chr5 (23440392-23440718)
               

               
               140-469, gnl|monDom2|scaffold_7 (11166350-11166609)
               

               
               140-469, gnl|oryCun1|scaffold_204516 (106423-106700)
               

               
               140-469, gnl|panTro1|chr6_random (16758526-16758249)
               

               
               140-469, gnl|rheMac2|chr3 (187979081-187979358)
               

               
               140-469, gnl|rn3|chr4 (6144099-6143825)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-469, gnl|bosTau2|chr4 (64559875-64559546)
               

               
               140-469, gnl|canFam2|chr16 (18034536-18034813)
               

               
               140-469, gnl|dasNov1|scaffold_41430 (51063-51352)
               

               
               140-469, gnl|echTel1|scaffold_275846 (4092-3803)
               

               
               140-469, gnl|hg17|chr7 (150168324-150168601)
               

               
               140-469, gnl|Hg17|chr7 (150168326-150168655)
               

               
               140-469, gnl|loxAfr1|scaffold_129402 (1429-1709)
               

               
               140-469, gnl|mm7|chr5 (23440390-23440664)
               

               
               140-469, gnl|Mm7|chr5 (23440392-23440718)
               

               
               140-469, gnl|monDom2|scaffold_7 (11166350-11166609)
               

               
               140-469, gnl|oryCun1|scaffold_204516 (106423-106700)
               

               
               140-469, gnl|panTro1|chr6_random (16758526-16758249)
               

               
               140-469, gnl|rheMac2|chr3 (187979081-187979358)
               

               
               140-469, gnl|rn3|chr4 (6144099-6143825)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	140-469, gnl\|bosTau2\|chr4 (64559875-64559546)
	140-469, gnl\|canFam2\|chr16 (18034536-18034813)
	140-469, gnl\|dasNov1\|scaffold_41430 (51063-51352)
	140-469, gnl\|echTel1\|scaffold_275846 (4092-3803)
	140-469, gnl\|hg17\|chr7 (150168324-150168601)
	140-469, gnl\|Hg17\|chr7 (150168326-150168655)
	140-469, gnl\|loxAfr1\|scaffold_129402 (1429-1709)
	140-469, gnl\|mm7\|chr5 (23440390-23440664)
	140-469, gnl\|Mm7\|chr5 (23440392-23440718)
	140-469, gnl\|monDom2\|scaffold_7 (11166350-11166609)
	140-469, gnl\|oryCun1\|scaffold_204516 (106423-106700)
	140-469, gnl\|panTro1\|chr6_random (16758526-16758249)
	140-469, gnl\|rheMac2\|chr3 (187979081-187979358)
	140-469, gnl\|rn3\|chr4 (6144099-6143825)