Ss1.1-Pig1-108B19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCACCATGGACGGGGCCAACGTGGAGATGGCCGAGGAGGCTGGGGCTGAGAACCTCTTC ATCTTCGGCCTGCGGGTGGAGGACGTTGAGGCCCTGGACCAAAAAGGGTACAATGCCAGG GAGTACTATGAGCGCCTGCCCGAGCTGCGGCAGGCCGTGGACCAGATCAGCAATGGTTTC TTCTCCCCCCGGAAACCTGACTGCTTCAAGGACCTCGTGGACATGCTGCTGAACCACGAC AGGTTCAAAGTATTTGCGGATTACGAAGCGTACGTGGCGTGCCAGGCCCGTGTGGACCAG CTGTACCAGGACCCCAAGGAGTGGACCAAGAAGGTCATCAGGAACATCGCCTGCTCAGGC AAGTTCTCCAGTGACCGGACCATCACAGAGTACGCCCGGGACATCTGGGGCGTGGAGCCC TCAGCCCAACAGGCCCAGGCCCCGAGCCTCCCCAGGGACTAGGACCCTGTCCTCAGACTA GGGCTTTGGTTTTCTTGCTGACTCTGCACCTCGCATCCAAGCACGTAGCCAGCACGCTGC TTTTTTCAGTGTTGTTGGAAGGGCTGTGGGGAGAGGAATAATGCTGGAGGTGAGGTAGGA GAGCTGAACCCACAGCACTGACTGGGGCAGCTGGCCTGTAGTTTGCCAGCCTGCCCCTTG GAAGCTCCCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCACCATGGACGGGGCCAACGTGGAGATGGCCGAGGAGGCTGGGGCTGAGAACCTCTTC ATCTTCGGCCTGCGGGTGGAGGACGTTGAGGCCCTGGACCAAAAAGGGTACAATGCCAGG GAGTACTATGAGCGCCTGCCCGAGCTGCGGCAGGCCGTGGACCAGATCAGCAATGGTTTC TTCTCCCCCCGGAAACCTGACTGCTTCAAGGACCTCGTGGACATGCTGCTGAACCACGAC AGGTTCAAAGTATTTGCGGATTACGAAGCGTACGTGGCGTGCCAGGCCCGTGTGGACCAG CTGTACCAGGACCCCAAGGAGTGGACCAAGAAGGTCATCAGGAACATCGCCTGCTCAGGC AAGTTCTCCAGTGACCGGACCATCACAGAGTACGCCCGGGACATCTGGGGCGTGGAGCCC TCAGCCCAACAGGCCCAGGCCCCGAGCCTCCCCAGGGACTAGGACCCTGTCCTCAGACTA GGGCTTTGGTTTTCTTGCTGACTCTGCACCTCGCATCCAAGCACGTAGCCAGCACGCTGC TTTTTTCAGTGTTGTTGGAAGGGCTGTGGGGAGAGGAATAATGCTGGAGGTGAGGTAGGA GAGCTGAACCCACAGCACTGACTGGGGCAGCTGGCCTGTAGTTTGCCAGCCTGCCCCTTG GAAGCTCCCTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 346-464, - strand, RNAz p=0.516664 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-464, - strand, RNAz p=0.516664 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr10 (29321769-29321661) | |
| 1-109, gnl|canFam2|chr8 (30283441-30283517) | |
| 1-109, gnl|danRer3|chr13 (39519488-39519563) | |
| 1-109, gnl|dasNov1|scaffold_46403 (3569-3645) | |
| 1-109, gnl|echTel1|scaffold_143842 (95-172) | |
| 1-109, gnl|fr1|chrUn (2689437-2689361) | |
| 1-109, gnl|galGal2|chr5 (54646920-54646989) | |
| 1-109, gnl|hg17|chr14 (50446354-50446430) | |
| 1-109, gnl|Hg17|chr14 (50446469-50446361) | |
| 1-109, gnl|loxAfr1|scaffold_10379 (43312-43388) | |
| 1-109, gnl|mm7|chr12 (68136487-68136563) | |
| 1-109, gnl|Mm7|chr12 (68136602-68136494) | |
| 1-109, gnl|monDom2|scaffold_73 (7125048-7125117) | |
| 1-109, gnl|oryCun1|scaffold_122700 (4953-4884) | |
| 1-109, gnl|panTro1|chr15 (49865678-49865754) | |
| 1-109, gnl|rheMac2|chr7 (113959476-113959552) | |
| 1-109, gnl|rn3|chr6 (92306849-92306925) | |
| 1-109, gnl|tetNig1|chr10 (11258017-11257943) | |
| 1-109, gnl|xenTro1|scaffold_341 (982144-982075) | |
| 307-570, gnl|bosTau2|chr13 (27963704-27963440) | |
| 307-570, gnl|Hg17|chr20 (25225003-25225294) | |
| 307-570, gnl|Mm7|chr2 (150571216-150571490) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr10 (29321769-29321661) | |
| 1-109, gnl|canFam2|chr8 (30283441-30283517) | |
| 1-109, gnl|danRer3|chr13 (39519488-39519563) | |
| 1-109, gnl|dasNov1|scaffold_46403 (3569-3645) | |
| 1-109, gnl|echTel1|scaffold_143842 (95-172) | |
| 1-109, gnl|fr1|chrUn (2689437-2689361) | |
| 1-109, gnl|galGal2|chr5 (54646920-54646989) | |
| 1-109, gnl|hg17|chr14 (50446354-50446430) | |
| 1-109, gnl|Hg17|chr14 (50446469-50446361) | |
| 1-109, gnl|loxAfr1|scaffold_10379 (43312-43388) | |
| 1-109, gnl|mm7|chr12 (68136487-68136563) | |
| 1-109, gnl|Mm7|chr12 (68136602-68136494) | |
| 1-109, gnl|monDom2|scaffold_73 (7125048-7125117) | |
| 1-109, gnl|oryCun1|scaffold_122700 (4953-4884) | |
| 1-109, gnl|panTro1|chr15 (49865678-49865754) | |
| 1-109, gnl|rheMac2|chr7 (113959476-113959552) | |
| 1-109, gnl|rn3|chr6 (92306849-92306925) | |
| 1-109, gnl|tetNig1|chr10 (11258017-11257943) | |
| 1-109, gnl|xenTro1|scaffold_341 (982144-982075) | |
| 307-570, gnl|bosTau2|chr13 (27963704-27963440) | |
| 307-570, gnl|Hg17|chr20 (25225003-25225294) | |
| 307-570, gnl|Mm7|chr2 (150571216-150571490) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) |