Non-Coding RNA Search

Ss1.1-Pig1-108D18.5

Sequence:


               
               CACCAGGAAGGACTAACTGCCTGTTTTCCTTGTGGTCTGGATGGCTCAGGGGGATAGCGG
GGGCCCCTTGGTGTGCCTGGACGGGGACACCTGGCGCCTGGTGGGCGTGGTCAGCTGGGG
CCACGGCTGTGCGGAGCCCAACCACCCGGGCGTCTACAGCAAGGTTGCTGAATTCCTGGA
CTGGATCCAGGACACGGCGCAGGTTTCATGTGCCTTTTTCATGGTGCTGGTACTTACGGT
GATGGCACAAAAACAACTGTGGATAAAACTGCTGGGATTTTGGCACAATCAAAGCAATGC
CACCAAAGAGTTCTAGCAGTCATTGTGAGAAAGGCGGGGACCTGGAACCCAGAGAGCCTC
AATGACAGGAGAGACGCCAGGGCTGGGTTGGGAAGGTGGAGGAACAGAGAGATGGCAGGA
AGCATCTGGAAAGGAAGAAGCTGCTGGCAGCAGCTGGGAGCCGGCCCTTCAGCACCGCCG
CCCCCCCCCGCCCCAGCCCTAGTCCATATCTTTTGGGTGGATGCTTAGGGATGCCCTGGG
CCTGCCTTCCCCCTGTGCTCTCAGGAGGGGGGTGTGCCTTCCTAGAGATCCAGGCTGGGA
AGTTCCTGGGCAGAGAGGGTCAAGGCTGGCCCAGCCCAGGTTAAAGCCATGGAATCTTCT
CTCAGTCTCATCTGCTTTCTGCTCTCAACTGGCTTTGGTTGGACCTGCTAAGAACACATT
GTAAGATCACACTGGTTGGTGTTGGAATCGGGTATAGGTTTTAAAATGACACTTCTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGGAAGGACTAACTGCCTGTTTTCCTTGTGGTCTGGATGGCTCAGGGGGATAGCGG
GGGCCCCTTGGTGTGCCTGGACGGGGACACCTGGCGCCTGGTGGGCGTGGTCAGCTGGGG
CCACGGCTGTGCGGAGCCCAACCACCCGGGCGTCTACAGCAAGGTTGCTGAATTCCTGGA
CTGGATCCAGGACACGGCGCAGGTTTCATGTGCCTTTTTCATGGTGCTGGTACTTACGGT
GATGGCACAAAAACAACTGTGGATAAAACTGCTGGGATTTTGGCACAATCAAAGCAATGC
CACCAAAGAGTTCTAGCAGTCATTGTGAGAAAGGCGGGGACCTGGAACCCAGAGAGCCTC
AATGACAGGAGAGACGCCAGGGCTGGGTTGGGAAGGTGGAGGAACAGAGAGATGGCAGGA
AGCATCTGGAAAGGAAGAAGCTGCTGGCAGCAGCTGGGAGCCGGCCCTTCAGCACCGCCG
CCCCCCCCCGCCCCAGCCCTAGTCCATATCTTTTGGGTGGATGCTTAGGGATGCCCTGGG
CCTGCCTTCCCCCTGTGCTCTCAGGAGGGGGGTGTGCCTTCCTAGAGATCCAGGCTGGGA
AGTTCCTGGGCAGAGAGGGTCAAGGCTGGCCCAGCCCAGGTTAAAGCCATGGAATCTTCT
CTCAGTCTCATCTGCTTTCTGCTCTCAACTGGCTTTGGTTGGACCTGCTAAGAACACATT
GTAAGATCACACTGGTTGGTGTTGGAATCGGGTATAGGTTTTAAAATGACACTTCTGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-496, - strand, RNAz p=0.879356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-496, - strand, RNAz p=0.879356

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               439-526, - strand, RNAmicro p=0.974854

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               439-526, - strand, RNAmicro p=0.974854

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-198, gnl|bosTau2|chr15 (10633355-10633152)
               

               
               1-198, gnl|Hg17|chr11 (113065904-113065703)
               

               
               1-198, gnl|Mm7|chr9 (49087532-49087732)
               


               
               352-780, gnl|bosTau2|chr15 (10631981-10631535)
               

               
               352-780, gnl|Hg17|chr11 (113063975-113063526)
               

               
               352-780, gnl|Mm7|chr9 (49089246-49089665)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-198, gnl|bosTau2|chr15 (10633355-10633152)
               

               
               1-198, gnl|Hg17|chr11 (113065904-113065703)
               

               
               1-198, gnl|Mm7|chr9 (49087532-49087732)
               


               
               352-780, gnl|bosTau2|chr15 (10631981-10631535)
               

               
               352-780, gnl|Hg17|chr11 (113063975-113063526)
               

               
               352-780, gnl|Mm7|chr9 (49089246-49089665)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-198, gnl\|bosTau2\|chr15 (10633355-10633152)
	1-198, gnl\|Hg17\|chr11 (113065904-113065703)
	1-198, gnl\|Mm7\|chr9 (49087532-49087732)

	352-780, gnl\|bosTau2\|chr15 (10631981-10631535)
	352-780, gnl\|Hg17\|chr11 (113063975-113063526)
	352-780, gnl\|Mm7\|chr9 (49089246-49089665)