Non-Coding RNA Search

Ss1.1-Pig1-108K24.5

Sequence:


               
               CCCTTCAGTCATGTCCTTCCCAGGCAGAAAAGGGAGGGGCTCCAGTAGGAATTCTAGCTC
TTAAGCTGACTTTGCCAAGTCAGGGTCTGCCTCTTAAAAGCAGAGACACACAACTGTCTC
CAGCTCCTCACTGCTACCAGAACCCAAGGGAGACCTGGAGTCTATCTCAGCCCATTAGAC
TTGCTGAGTGACCCCTGGCCCACCCCTTCCTTGTGTTGTGGCTTCACTGATGTAATGAAT
TTGATAATGTCTGAACCCTCTGTCCAGCCCTAAATTGCTTCTCCGAGGTCGGGGCCTGGC
TTCTCAGTGACAGGTGCCCTTCTCTGATGGTTCTTTGTTCTCCCATGTATTTGCTGAGCA
CCCACTGTAAGCACAGCCAAAGAGAGGGGCCCACTCTTATCCTGTCTTCACCTCTGCCCC
ATCTAGCATCTCTGTTCTCCTGGGTTTTTCCTTCTACACCTTCACTTCTCTCCATCTTGG
CTGATCCCTTCTCCACCTTCAAATGGACTCAAGTTTCCCCATCTGACACCTTAAGAGGTA
CAAATAGAACTATTCTGCTCTCGTCCCTGGGCAGGTCCACCTGGGAGCTGTGGGAGCATC
TGTAGAGTGGGAGACAGACTGGGTCCACTTACCTGACCTGGTGCTCAGAGATCCCTCTGC
AGAGGTTTACTGAGGCTCTGGGATGGGAAGGCATTGGACCACAATGAAAGTGAGCCATAT
GGTATGCCAGCATCACCCCCAGTGTGGGGAGCCCTGTGCGAGCCACTGAAGGGTACATGT
GAAGATGACACTGCCCAGCTCAGTGCCTGGACCAGAGCAGGGCAGCGGGGTTTGATTTTG
TTTCCGGGTAAGACTGGTGTAACCTATACCGGCTCTTCTGCATGTAAACAAGAGAACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTCAGTCATGTCCTTCCCAGGCAGAAAAGGGAGGGGCTCCAGTAGGAATTCTAGCTC
TTAAGCTGACTTTGCCAAGTCAGGGTCTGCCTCTTAAAAGCAGAGACACACAACTGTCTC
CAGCTCCTCACTGCTACCAGAACCCAAGGGAGACCTGGAGTCTATCTCAGCCCATTAGAC
TTGCTGAGTGACCCCTGGCCCACCCCTTCCTTGTGTTGTGGCTTCACTGATGTAATGAAT
TTGATAATGTCTGAACCCTCTGTCCAGCCCTAAATTGCTTCTCCGAGGTCGGGGCCTGGC
TTCTCAGTGACAGGTGCCCTTCTCTGATGGTTCTTTGTTCTCCCATGTATTTGCTGAGCA
CCCACTGTAAGCACAGCCAAAGAGAGGGGCCCACTCTTATCCTGTCTTCACCTCTGCCCC
ATCTAGCATCTCTGTTCTCCTGGGTTTTTCCTTCTACACCTTCACTTCTCTCCATCTTGG
CTGATCCCTTCTCCACCTTCAAATGGACTCAAGTTTCCCCATCTGACACCTTAAGAGGTA
CAAATAGAACTATTCTGCTCTCGTCCCTGGGCAGGTCCACCTGGGAGCTGTGGGAGCATC
TGTAGAGTGGGAGACAGACTGGGTCCACTTACCTGACCTGGTGCTCAGAGATCCCTCTGC
AGAGGTTTACTGAGGCTCTGGGATGGGAAGGCATTGGACCACAATGAAAGTGAGCCATAT
GGTATGCCAGCATCACCCCCAGTGTGGGGAGCCCTGTGCGAGCCACTGAAGGGTACATGT
GAAGATGACACTGCCCAGCTCAGTGCCTGGACCAGAGCAGGGCAGCGGGGTTTGATTTTG
TTTCCGGGTAAGACTGGTGTAACCTATACCGGCTCTTCTGCATGTAAACAAGAGAACGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-143, - strand, RNAz p=0.99593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-143, - strand, RNAz p=0.99593

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-891, gnl|bosTau2|chr5 (70367563-70368445)
               

               
               1-891, gnl|Hg17|chr22 (40547297-40551135)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-891, gnl|bosTau2|chr5 (70367563-70368445)
               

               
               1-891, gnl|Hg17|chr22 (40547297-40551135)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               eli (0.151814)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eli (0.151814)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	1-891, gnl\|bosTau2\|chr5 (70367563-70368445)
	1-891, gnl\|Hg17\|chr22 (40547297-40551135)