Non-Coding RNA Search

Ss1.1-Pig1-10D24.5

Sequence:


               
               GCAGCGAGGAGGAAGGTAGCAGCAGCCGTCTGTCTCCGCCACATAGTCCACGAGACTTCA
CCCGAATGCAGGACATCCCGGAAGAGACTGAGAGCCGAGACGGGGAGCCTGTAGCTTCAG
AGAGCTAAGGGGGCCCCTCCCCCCCTGCCCTGTGTCCCCCTTGAAGAACATTACTGAGGG
AGGCAAACCTTGGGGACTCCAATCTGCCAATGATGAGGGAACATTTGAAAGAACTGCTGA
TTGTCCTTGCCAGCTCTTGGGATCCTTGGATACCAGGAGCCATTTAGGAAGCTGGGGGAA
TTGGGCCACAGTGCCCCCTGGTGGCATCCAGAAGTTACACCGCAGATGCCAATTTTTCAT
GCCTTCTTCCCTCTACTTTAGGAAAAATTTATTTATTTATTGTTTATTAGTTATGGAGGG
AGAGGGGAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGAGGAGGAAGGTAGCAGCAGCCGTCTGTCTCCGCCACATAGTCCACGAGACTTCA
CCCGAATGCAGGACATCCCGGAAGAGACTGAGAGCCGAGACGGGGAGCCTGTAGCTTCAG
AGAGCTAAGGGGGCCCCTCCCCCCCTGCCCTGTGTCCCCCTTGAAGAACATTACTGAGGG
AGGCAAACCTTGGGGACTCCAATCTGCCAATGATGAGGGAACATTTGAAAGAACTGCTGA
TTGTCCTTGCCAGCTCTTGGGATCCTTGGATACCAGGAGCCATTTAGGAAGCTGGGGGAA
TTGGGCCACAGTGCCCCCTGGTGGCATCCAGAAGTTACACCGCAGATGCCAATTTTTCAT
GCCTTCTTCCCTCTACTTTAGGAAAAATTTATTTATTTATTGTTTATTAGTTATGGAGGG
AGAGGGGAAATT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-432, gnl|bosTau2|chr3 (10658509-10658907)
               

               
               30-432, gnl|Hg17|chr1 (152730904-152730507)
               

               
               30-432, gnl|Mm7|chr3 (88760562-88760935)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-432, gnl|bosTau2|chr3 (10658509-10658907)
               

               
               30-432, gnl|Hg17|chr1 (152730904-152730507)
               

               
               30-432, gnl|Mm7|chr3 (88760562-88760935)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	30-432, gnl\|bosTau2\|chr3 (10658509-10658907)
	30-432, gnl\|Hg17\|chr1 (152730904-152730507)
	30-432, gnl\|Mm7\|chr3 (88760562-88760935)