Non-Coding RNA Search

Ss1.1-Pig1-10K12.5

Sequence:


               
               GGCTTACACAGAACCATCACCATGAACTTGGAATATTTCGGCTAGGTTTTGGCCTCTCTG
CTGCTAGGAGAGCAGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTACAGACACACACCC
TTAAGTCATGTGATTAAAGTATGGAAGGATTTTCGGAAACAGTAAGAAAATATAGGGTCC
TTATTGACACCTAAACAGAGACCATAAAGGCATGGGGGAAGAATCTATTTGAAAATATCA
CAGGAAAAATACTTTGAGACTTTGTGAAATTGAGGAGACCCCCTTCCTGAACAAAAAGTT
AAAGCCCAGTGAGTATCCCGTCACTGCCAATCCAATATAAAATCAGTGGCAACTGAAGAA
AAACCTAATAGGGTATATAGATTTTGTTTTGTTTTTTTGGCATTTCTAGATCTCAGATGC
CAGCATTACATCACACAAAACCAGTGGTGCCTTGTAGGATGCTATGTTGGCCTGCTGACC
TGTGCTACCTCAGATCTATAAAGAACCAGCGTGGAATGTACACATCTCATCTGTCAATGA
CTTAGGTCACAGCTGAGACAAAGATGTCTTCATTTAGTTGAATATAGTTTTTCATCAGTT
CCATTCAGCATAATTTAGAAAAACATTTTCAAAATCGCACCTTTTTTTTTTCCTGTTTGG
CCGTTGTTAAAAAACACTTCTCCTTCCATGTATACGTGCAATCCGCAGAAACTGTTGTCA
GCTTTCTGTCCACTATTTCAAAACTCATTTTTAAAGGAAGTAGCATATTAGCTCTGGGTC
TTATTATCATGAATAAAATGATTATTGTAAAAGCATAGAACTTTATATTTTTAAATGTAC
AAATAAAATCTATTATCTAATGTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTACACAGAACCATCACCATGAACTTGGAATATTTCGGCTAGGTTTTGGCCTCTCTG
CTGCTAGGAGAGCAGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTACAGACACACACCC
TTAAGTCATGTGATTAAAGTATGGAAGGATTTTCGGAAACAGTAAGAAAATATAGGGTCC
TTATTGACACCTAAACAGAGACCATAAAGGCATGGGGGAAGAATCTATTTGAAAATATCA
CAGGAAAAATACTTTGAGACTTTGTGAAATTGAGGAGACCCCCTTCCTGAACAAAAAGTT
AAAGCCCAGTGAGTATCCCGTCACTGCCAATCCAATATAAAATCAGTGGCAACTGAAGAA
AAACCTAATAGGGTATATAGATTTTGTTTTGTTTTTTTGGCATTTCTAGATCTCAGATGC
CAGCATTACATCACACAAAACCAGTGGTGCCTTGTAGGATGCTATGTTGGCCTGCTGACC
TGTGCTACCTCAGATCTATAAAGAACCAGCGTGGAATGTACACATCTCATCTGTCAATGA
CTTAGGTCACAGCTGAGACAAAGATGTCTTCATTTAGTTGAATATAGTTTTTCATCAGTT
CCATTCAGCATAATTTAGAAAAACATTTTCAAAATCGCACCTTTTTTTTTTCCTGTTTGG
CCGTTGTTAAAAAACACTTCTCCTTCCATGTATACGTGCAATCCGCAGAAACTGTTGTCA
GCTTTCTGTCCACTATTTCAAAACTCATTTTTAAAGGAAGTAGCATATTAGCTCTGGGTC
TTATTATCATGAATAAAATGATTATTGTAAAAGCATAGAACTTTATATTTTTAAATGTAC
AAATAAAATCTATTATCTAATGTAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               390-492, - strand, RNAz p=0.740951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-492, - strand, RNAz p=0.740951

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               123-249, gnl|bosTau2|chr16 (45738021-45737889)
               

               
               123-249, gnl|canFam2|chr7 (16374043-16374364)
               

               
               123-249, gnl|dasNov1|scaffold_11185 (3357-3125)
               

               
               123-249, gnl|echTel1|scaffold_317338 (85992-85764)
               

               
               123-249, gnl|hg17|chr1 (176545084-176545235)
               

               
               123-249, gnl|loxAfr1|scaffold_23771 (2015-1788)
               

               
               123-249, gnl|mm7|chr1 (156029024-156028825)
               

               
               123-249, gnl|Mm7|chr1 (156028841-156028957)
               

               
               123-249, gnl|monDom2|scaffold_0 (115633848-115634005)
               

               
               123-249, gnl|oryCun1|scaffold_190395 (8415-8186)
               

               
               123-249, gnl|panTro1|chr1_random (34131246-34131397)
               

               
               123-249, gnl|rheMac2|chr1 (190891534-190891383)
               

               
               123-249, gnl|rn3|chr13 (71115924-71115729)
               


               
               270-648, gnl|bosTau2|chr16 (45737776-45737403)
               

               
               270-648, gnl|Hg17|chr1 (176545051-176544724)
               


               
               666-864, gnl|bosTau2|chr16 (45737158-45736963)
               

               
               666-864, gnl|Hg17|chr1 (176544688-176543890)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-249, gnl|bosTau2|chr16 (45738021-45737889)
               

               
               123-249, gnl|canFam2|chr7 (16374043-16374364)
               

               
               123-249, gnl|dasNov1|scaffold_11185 (3357-3125)
               

               
               123-249, gnl|echTel1|scaffold_317338 (85992-85764)
               

               
               123-249, gnl|hg17|chr1 (176545084-176545235)
               

               
               123-249, gnl|loxAfr1|scaffold_23771 (2015-1788)
               

               
               123-249, gnl|mm7|chr1 (156029024-156028825)
               

               
               123-249, gnl|Mm7|chr1 (156028841-156028957)
               

               
               123-249, gnl|monDom2|scaffold_0 (115633848-115634005)
               

               
               123-249, gnl|oryCun1|scaffold_190395 (8415-8186)
               

               
               123-249, gnl|panTro1|chr1_random (34131246-34131397)
               

               
               123-249, gnl|rheMac2|chr1 (190891534-190891383)
               

               
               123-249, gnl|rn3|chr13 (71115924-71115729)
               


               
               270-648, gnl|bosTau2|chr16 (45737776-45737403)
               

               
               270-648, gnl|Hg17|chr1 (176545051-176544724)
               


               
               666-864, gnl|bosTau2|chr16 (45737158-45736963)
               

               
               666-864, gnl|Hg17|chr1 (176544688-176543890)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nbm (0.297974)
               

               
               mgm (0.180343)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               mgm (0.180343)

	123-249, gnl\|bosTau2\|chr16 (45738021-45737889)
	123-249, gnl\|canFam2\|chr7 (16374043-16374364)
	123-249, gnl\|dasNov1\|scaffold_11185 (3357-3125)
	123-249, gnl\|echTel1\|scaffold_317338 (85992-85764)
	123-249, gnl\|hg17\|chr1 (176545084-176545235)
	123-249, gnl\|loxAfr1\|scaffold_23771 (2015-1788)
	123-249, gnl\|mm7\|chr1 (156029024-156028825)
	123-249, gnl\|Mm7\|chr1 (156028841-156028957)
	123-249, gnl\|monDom2\|scaffold_0 (115633848-115634005)
	123-249, gnl\|oryCun1\|scaffold_190395 (8415-8186)
	123-249, gnl\|panTro1\|chr1_random (34131246-34131397)
	123-249, gnl\|rheMac2\|chr1 (190891534-190891383)
	123-249, gnl\|rn3\|chr13 (71115924-71115729)

	270-648, gnl\|bosTau2\|chr16 (45737776-45737403)
	270-648, gnl\|Hg17\|chr1 (176545051-176544724)

	666-864, gnl\|bosTau2\|chr16 (45737158-45736963)
	666-864, gnl\|Hg17\|chr1 (176544688-176543890)