Ss1.1-Pig1-10L13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAAACACACCCAGACAACGGGCAGTAGAAGCTCAGAAACTGATGAAATACTTTAATGAG TTTCTAGATGGAGAATTGAAATCTGATGTTTTTACAAATTCTGAAAAGATAAAGGAGGCA GCAGACATCATTCAGAAGTTGCACCTAATCGCCCAGGAGTTACCTTTTGATAGATTTTCA GAAGTTAAATCCAAAATTGCAAGTAAATACCATGATTTAGAATGCCAGCTGATCCAGGAG TTTACCAGTGCTCAAAGAAGGGGTGAAATCTCCAGAATGAGAGAAGTAGCAGCTGTTTTA CTTCATTTTAAGGGTTATTCCCATTGTGTTGATGTTTATATAAAGCAGTGCCAGGAGGGT GCTTACTTGAGAAATGATATATTTGAAGATGCAGCAATACTGTGTCAACGGGTGAACAAA CAAGTTGGCGATATCTTTAGTAATCCAGAAACTGTATTGGCTAAACTTATTCAAAATGTA TTTGAAATCAAATTACAGAGCTTTGTGAAAGACCAGTTAGAAGAATGTAGGAAGTCTGAT GCAGAGCAGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAAACACACCCAGACAACGGGCAGTAGAAGCTCAGAAACTGATGAAATACTTTAATGAG TTTCTAGATGGAGAATTGAAATCTGATGTTTTTACAAATTCTGAAAAGATAAAGGAGGCA GCAGACATCATTCAGAAGTTGCACCTAATCGCCCAGGAGTTACCTTTTGATAGATTTTCA GAAGTTAAATCCAAAATTGCAAGTAAATACCATGATTTAGAATGCCAGCTGATCCAGGAG TTTACCAGTGCTCAAAGAAGGGGTGAAATCTCCAGAATGAGAGAAGTAGCAGCTGTTTTA CTTCATTTTAAGGGTTATTCCCATTGTGTTGATGTTTATATAAAGCAGTGCCAGGAGGGT GCTTACTTGAGAAATGATATATTTGAAGATGCAGCAATACTGTGTCAACGGGTGAACAAA CAAGTTGGCGATATCTTTAGTAATCCAGAAACTGTATTGGCTAAACTTATTCAAAATGTA TTTGAAATCAAATTACAGAGCTTTGTGAAAGACCAGTTAGAAGAATGTAGGAAGTCTGAT GCAGAGCAGTAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-108, - strand, RNAz p=0.512876 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-108, - strand, RNAz p=0.512876 |
| Aligned organism(s): 87 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr10 (46474907-46475014) | |
| 1-108, gnl|canFam2|chr8 (35857467-35857544) | |
| 1-108, gnl|canFam2|chr8 (35857663-35857469) | |
| 1-108, gnl|danRer3|chr17 (46896275-46896198) | |
| 1-108, gnl|danRer3|chr17 (46896079-46896278) | |
| 1-108, gnl|dasNov1|scaffold_73156 (5108-5033) | |
| 1-108, gnl|dasNov1|scaffold_73156 (4915-5111) | |
| 1-108, gnl|echTel1|scaffold_318432 (94824-94747) | |
| 1-108, gnl|echTel1|scaffold_318432 (94628-94827) | |
| 1-108, gnl|fr1|chrUn (35016870-35016793) | |
| 1-108, gnl|fr1|chrUn (35016674-35016873) | |
| 1-108, gnl|galGal2|chr5 (52329431-52329354) | |
| 1-108, gnl|galGal2|chr5 (52329235-52329434) | |
| 1-108, gnl|hg17|chr14 (56780637-56780714) | |
| 1-108, gnl|Hg17|chr14 (56780743-56780636) | |
| 1-108, gnl|hg17|chr4 (63511574-63511772) | |
| 1-108, gnl|loxAfr1|scaffold_14907 (151-228) | |
| 1-108, gnl|loxAfr1|scaffold_14907 (347-148) | |
| 1-108, gnl|mm7|chr14 (44380434-44380511) | |
| 1-108, gnl|mm7|chr14 (44380626-44380434) | |
| 1-108, gnl|Mm7|chr14 (44380540-44380433) | |
| 1-108, gnl|monDom2|scaffold_8 (69201141-69201218) | |
| 1-108, gnl|monDom2|scaffold_8 (69201337-69201138) | |
| 1-108, gnl|oryCun1|scaffold_203382 (14867-14790) | |
| 1-108, gnl|oryCun1|scaffold_69702 (2884-2692) | |
| 1-108, gnl|panTro1|chr15 (56234071-56234148) | |
| 1-108, gnl|panTro1|chr3 (83098029-83097830) | |
| 1-108, gnl|rheMac2|chr7 (120255492-120255569) | |
| 1-108, gnl|rheMac2|chr7 (120255684-120255494) | |
| 1-108, gnl|rn3|chr15 (25053496-25053573) | |
| 1-108, gnl|rn3|chr15 (25053688-25053493) | |
| 1-108, gnl|tetNig1|chr10 (5007755-5007678) | |
| 1-108, gnl|tetNig1|chr10 (5007559-5007758) | |
| 1-108, gnl|xenTro1|scaffold_33 (1625718-1625641) | |
| 1-108, gnl|xenTro1|scaffold_33 (1625474-1625721) | |
| 203-313, gnl|bosTau2|chr10 (46482575-46482685) | |
| 203-313, gnl|canFam2|chr8 (35848830-35848952) | |
| 203-313, gnl|canFam2|chr8 (35848944-35848838) | |
| 203-313, gnl|danRer3|chr17 (46900697-46900570) | |
| 203-313, gnl|danRer3|chr17 (46900585-46900694) | |
| 203-313, gnl|dasNov1|scaffold_73156 (5321-5197) | |
| 203-313, gnl|dasNov1|scaffold_73156 (5204-5324) | |
| 203-313, gnl|echTel1|scaffold_221479 (2197-2070) | |
| 203-313, gnl|echTel1|scaffold_221479 (2083-2189) | |
| 203-313, gnl|fr1|chrUn (35018774-35018657) | |
| 203-313, gnl|fr1|chrUn (35018662-35018770) | |
| 203-313, gnl|galGal2|chr5 (52333861-52333741) | |
| 203-313, gnl|galGal2|chr5 (52333747-52333853) | |
| 203-313, gnl|hg17|chr14 (56772177-56772299) | |
| 203-313, gnl|Hg17|chr14 (56772291-56772181) | |
| 203-313, gnl|hg17|chr4 (63511865-63511974) | |
| 203-313, gnl|loxAfr1|scaffold_19652 (10440-10489) | |
| 203-313, gnl|mm7|chr14 (44368828-44368950) | |
| 203-313, gnl|mm7|chr14 (44368942-44368833) | |
| 203-313, gnl|Mm7|chr14 (44368942-44368832) | |
| 203-313, gnl|monDom2|scaffold_8 (69184930-69185051) | |
| 203-313, gnl|monDom2|scaffold_8 (69185044-69184953) | |
| 203-313, gnl|oryCun1|scaffold_203382 (22857-22737) | |
| 203-313, gnl|oryCun1|scaffold_203382 (22743-22850) | |
| 203-313, gnl|panTro1|chr15 (56225658-56225780) | |
| 203-313, gnl|panTro1|chr3 (83097737-83097629) | |
| 203-313, gnl|rheMac2|chr7 (120247470-120247592) | |
| 203-313, gnl|rheMac2|chr7 (120247584-120247477) | |
| 203-313, gnl|rn3|chr15 (25045750-25045872) | |
| 203-313, gnl|rn3|chr15 (25045864-25045758) | |
| 203-313, gnl|tetNig1|chr10 (5009496-5009376) | |
| 203-313, gnl|tetNig1|chr10 (5009384-5009493) | |
| 203-313, gnl|xenTro1|scaffold_33 (1627662-1627540) | |
| 203-313, gnl|xenTro1|scaffold_33 (1625783-1625912) | |
| 356-498, gnl|bosTau2|chr10 (46483397-46483539) | |
| 356-498, gnl|canFam2|chr8 (35843354-35843232) | |
| 356-498, gnl|danRer3|chr17 (46900956-46901076) | |
| 356-498, gnl|dasNov1|scaffold_73156 (5370-5492) | |
| 356-498, gnl|echTel1|scaffold_221479 (4008-4130) | |
| 356-498, gnl|fr1|chrUn (35019132-35019252) | |
| 356-498, gnl|galGal2|chr5 (52334452-52334560) | |
| 356-498, gnl|Hg17|chr14 (56770356-56770214) | |
| 356-498, gnl|hg17|chr4 (63512020-63512142) | |
| 356-498, gnl|mm7|chr14 (44368059-44367937) | |
| 356-498, gnl|Mm7|chr14 (44368061-44367919) | |
| 356-498, gnl|monDom2|scaffold_8 (69184066-69183944) | |
| 356-498, gnl|oryCun1|scaffold_203382 (24178-24300) | |
| 356-498, gnl|panTro1|chr3 (83097583-83097460) | |
| 356-498, gnl|rheMac2|chr7 (120245663-120245541) | |
| 356-498, gnl|rn3|chr15 (25044980-25044858) | |
| 356-498, gnl|tetNig1|chr10 (5009836-5009956) | |
| 356-498, gnl|xenTro1|scaffold_33 (1628649-1628769) |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr10 (46474907-46475014) | |
| 1-108, gnl|canFam2|chr8 (35857467-35857544) | |
| 1-108, gnl|canFam2|chr8 (35857663-35857469) | |
| 1-108, gnl|danRer3|chr17 (46896275-46896198) | |
| 1-108, gnl|danRer3|chr17 (46896079-46896278) | |
| 1-108, gnl|dasNov1|scaffold_73156 (5108-5033) | |
| 1-108, gnl|dasNov1|scaffold_73156 (4915-5111) | |
| 1-108, gnl|echTel1|scaffold_318432 (94824-94747) | |
| 1-108, gnl|echTel1|scaffold_318432 (94628-94827) | |
| 1-108, gnl|fr1|chrUn (35016870-35016793) | |
| 1-108, gnl|fr1|chrUn (35016674-35016873) | |
| 1-108, gnl|galGal2|chr5 (52329431-52329354) | |
| 1-108, gnl|galGal2|chr5 (52329235-52329434) | |
| 1-108, gnl|hg17|chr14 (56780637-56780714) | |
| 1-108, gnl|Hg17|chr14 (56780743-56780636) | |
| 1-108, gnl|hg17|chr4 (63511574-63511772) | |
| 1-108, gnl|loxAfr1|scaffold_14907 (151-228) | |
| 1-108, gnl|loxAfr1|scaffold_14907 (347-148) | |
| 1-108, gnl|mm7|chr14 (44380434-44380511) | |
| 1-108, gnl|mm7|chr14 (44380626-44380434) | |
| 1-108, gnl|Mm7|chr14 (44380540-44380433) | |
| 1-108, gnl|monDom2|scaffold_8 (69201141-69201218) | |
| 1-108, gnl|monDom2|scaffold_8 (69201337-69201138) | |
| 1-108, gnl|oryCun1|scaffold_203382 (14867-14790) | |
| 1-108, gnl|oryCun1|scaffold_69702 (2884-2692) | |
| 1-108, gnl|panTro1|chr15 (56234071-56234148) | |
| 1-108, gnl|panTro1|chr3 (83098029-83097830) | |
| 1-108, gnl|rheMac2|chr7 (120255492-120255569) | |
| 1-108, gnl|rheMac2|chr7 (120255684-120255494) | |
| 1-108, gnl|rn3|chr15 (25053496-25053573) | |
| 1-108, gnl|rn3|chr15 (25053688-25053493) | |
| 1-108, gnl|tetNig1|chr10 (5007755-5007678) | |
| 1-108, gnl|tetNig1|chr10 (5007559-5007758) | |
| 1-108, gnl|xenTro1|scaffold_33 (1625718-1625641) | |
| 1-108, gnl|xenTro1|scaffold_33 (1625474-1625721) | |
| 203-313, gnl|bosTau2|chr10 (46482575-46482685) | |
| 203-313, gnl|canFam2|chr8 (35848830-35848952) | |
| 203-313, gnl|canFam2|chr8 (35848944-35848838) | |
| 203-313, gnl|danRer3|chr17 (46900697-46900570) | |
| 203-313, gnl|danRer3|chr17 (46900585-46900694) | |
| 203-313, gnl|dasNov1|scaffold_73156 (5321-5197) | |
| 203-313, gnl|dasNov1|scaffold_73156 (5204-5324) | |
| 203-313, gnl|echTel1|scaffold_221479 (2197-2070) | |
| 203-313, gnl|echTel1|scaffold_221479 (2083-2189) | |
| 203-313, gnl|fr1|chrUn (35018774-35018657) | |
| 203-313, gnl|fr1|chrUn (35018662-35018770) | |
| 203-313, gnl|galGal2|chr5 (52333861-52333741) | |
| 203-313, gnl|galGal2|chr5 (52333747-52333853) | |
| 203-313, gnl|hg17|chr14 (56772177-56772299) | |
| 203-313, gnl|Hg17|chr14 (56772291-56772181) | |
| 203-313, gnl|hg17|chr4 (63511865-63511974) | |
| 203-313, gnl|loxAfr1|scaffold_19652 (10440-10489) | |
| 203-313, gnl|mm7|chr14 (44368828-44368950) | |
| 203-313, gnl|mm7|chr14 (44368942-44368833) | |
| 203-313, gnl|Mm7|chr14 (44368942-44368832) | |
| 203-313, gnl|monDom2|scaffold_8 (69184930-69185051) | |
| 203-313, gnl|monDom2|scaffold_8 (69185044-69184953) | |
| 203-313, gnl|oryCun1|scaffold_203382 (22857-22737) | |
| 203-313, gnl|oryCun1|scaffold_203382 (22743-22850) | |
| 203-313, gnl|panTro1|chr15 (56225658-56225780) | |
| 203-313, gnl|panTro1|chr3 (83097737-83097629) | |
| 203-313, gnl|rheMac2|chr7 (120247470-120247592) | |
| 203-313, gnl|rheMac2|chr7 (120247584-120247477) | |
| 203-313, gnl|rn3|chr15 (25045750-25045872) | |
| 203-313, gnl|rn3|chr15 (25045864-25045758) | |
| 203-313, gnl|tetNig1|chr10 (5009496-5009376) | |
| 203-313, gnl|tetNig1|chr10 (5009384-5009493) | |
| 203-313, gnl|xenTro1|scaffold_33 (1627662-1627540) | |
| 203-313, gnl|xenTro1|scaffold_33 (1625783-1625912) | |
| 356-498, gnl|bosTau2|chr10 (46483397-46483539) | |
| 356-498, gnl|canFam2|chr8 (35843354-35843232) | |
| 356-498, gnl|danRer3|chr17 (46900956-46901076) | |
| 356-498, gnl|dasNov1|scaffold_73156 (5370-5492) | |
| 356-498, gnl|echTel1|scaffold_221479 (4008-4130) | |
| 356-498, gnl|fr1|chrUn (35019132-35019252) | |
| 356-498, gnl|galGal2|chr5 (52334452-52334560) | |
| 356-498, gnl|Hg17|chr14 (56770356-56770214) | |
| 356-498, gnl|hg17|chr4 (63512020-63512142) | |
| 356-498, gnl|mm7|chr14 (44368059-44367937) | |
| 356-498, gnl|Mm7|chr14 (44368061-44367919) | |
| 356-498, gnl|monDom2|scaffold_8 (69184066-69183944) | |
| 356-498, gnl|oryCun1|scaffold_203382 (24178-24300) | |
| 356-498, gnl|panTro1|chr3 (83097583-83097460) | |
| 356-498, gnl|rheMac2|chr7 (120245663-120245541) | |
| 356-498, gnl|rn3|chr15 (25044980-25044858) | |
| 356-498, gnl|tetNig1|chr10 (5009836-5009956) | |
| 356-498, gnl|xenTro1|scaffold_33 (1628649-1628769) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |