Non-Coding RNA Search

Ss1.1-Pig1-110E15.5

Sequence:


               
               GTGGGGGAGGTGCCCCACCTCAGCCCGCAGGAGGCAGTTGCTTAGAGTGCGGTCGCCCCA
GCAGACCCAGTGCCCCCAGGCCTGGTGCCGGCCTGGTGCTGTCTGCCCTGAGCGGACACT
CGTCCCCCACTGTCAGGTAGCAAAGCCACTTGCCACAGGCTGCGCACCCATCCCCCAGGC
CACTCGGCCGTGCTCCCAAAGCTCCAGCAGCACCTGGAGACATGCCCTCTGCTCTCTCCA
CCCCTGGCCTTTGTTCTGGAAACCTCAGAGAGGACTGGGGCTTGACTCATCTCAGGGAAT
GTTGCCCCTGGGCCCTGGCTTAAGGCTACACTCCTGATCTCTCTGCTCACCCCAAGGGCC
CTCGCAAAGCCCACTGCCCCTGTCCAGCTCCTAAGAGGTACCATCCTCACTCTGGGTCCT
GCCCCTTCCTAGCAGAGGCCCAGCTCCTACCAGCCTGGGGAAGCTCTGCACAGAGCGACC
TGGGACCAGGCACAGGGACACTTGTGTCGCTCAGTCAGCGTCTAACTGTGTAAGCAATAA
GGTCTTAATAAAGTGCTCTGGGGTCTCGGTGGTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGGGAGGTGCCCCACCTCAGCCCGCAGGAGGCAGTTGCTTAGAGTGCGGTCGCCCCA
GCAGACCCAGTGCCCCCAGGCCTGGTGCCGGCCTGGTGCTGTCTGCCCTGAGCGGACACT
CGTCCCCCACTGTCAGGTAGCAAAGCCACTTGCCACAGGCTGCGCACCCATCCCCCAGGC
CACTCGGCCGTGCTCCCAAAGCTCCAGCAGCACCTGGAGACATGCCCTCTGCTCTCTCCA
CCCCTGGCCTTTGTTCTGGAAACCTCAGAGAGGACTGGGGCTTGACTCATCTCAGGGAAT
GTTGCCCCTGGGCCCTGGCTTAAGGCTACACTCCTGATCTCTCTGCTCACCCCAAGGGCC
CTCGCAAAGCCCACTGCCCCTGTCCAGCTCCTAAGAGGTACCATCCTCACTCTGGGTCCT
GCCCCTTCCTAGCAGAGGCCCAGCTCCTACCAGCCTGGGGAAGCTCTGCACAGAGCGACC
TGGGACCAGGCACAGGGACACTTGTGTCGCTCAGTCAGCGTCTAACTGTGTAAGCAATAA
GGTCTTAATAAAGTGCTCTGGGGTCTCGGTGGTCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               247-521, - strand, RNAz p=0.992716

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-521, - strand, RNAz p=0.992716

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               284-363, + strand, RNAmicro p=0.999805

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               284-363, + strand, RNAmicro p=0.999805

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               106-573, gnl|bosTau2|chr5 (21126178-21126650)
               

               
               106-573, gnl|Hg17|chr5 (139928363-139928852)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-573, gnl|bosTau2|chr5 (21126178-21126650)
               

               
               106-573, gnl|Hg17|chr5 (139928363-139928852)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	106-573, gnl\|bosTau2\|chr5 (21126178-21126650)
	106-573, gnl\|Hg17\|chr5 (139928363-139928852)

	mas (0.210305)
	fcc (0.197785)
	ton (0.1755)
	nco (0.161734)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)