Non-Coding RNA Search

Ss1.1-Pig1-110F09.5

Sequence:


               
               CCAAACCCCAGCACCCTGAGACACATACATTTTGTTTCCAGACCAAGCTGGGATCCTGTG
GGAAGTGGTGCCTGGTCATGATCAGAAGCTGTTCCCCTATGAAGAGTGCTCGGAGATGAC
AATTCTGAAACTAACACTGTAGGTTTACAGTTTTGAAAAATAATGTGAAAATTAAATCAC
CATCCTAGGACTTTTTTGGCCGCACCGGCAGCATGCATGAGTTCTGGGGCCAGGGATCAA
GCCTGCGCCACAGCAGTGACAGCACCAGGTCCTCAACCTGCTGAGCCAGCAGGGAACTCC
CTTAGAAAGAATTTTTTTTTTATTCCAGTTGATTTACAATGTTCTGTTGATTTCTGCTGT
AAATATACAGAATTTTTATGTGGGAAAGCTGCTAAAACATCCATTGGACTTGAATGTTTG
AGGAACATTAAATTCTGAATCAAACGGTGTTCCACATTAAACTGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAACCCCAGCACCCTGAGACACATACATTTTGTTTCCAGACCAAGCTGGGATCCTGTG
GGAAGTGGTGCCTGGTCATGATCAGAAGCTGTTCCCCTATGAAGAGTGCTCGGAGATGAC
AATTCTGAAACTAACACTGTAGGTTTACAGTTTTGAAAAATAATGTGAAAATTAAATCAC
CATCCTAGGACTTTTTTGGCCGCACCGGCAGCATGCATGAGTTCTGGGGCCAGGGATCAA
GCCTGCGCCACAGCAGTGACAGCACCAGGTCCTCAACCTGCTGAGCCAGCAGGGAACTCC
CTTAGAAAGAATTTTTTTTTTATTCCAGTTGATTTACAATGTTCTGTTGATTTCTGCTGT
AAATATACAGAATTTTTATGTGGGAAAGCTGCTAAAACATCCATTGGACTTGAATGTTTG
AGGAACATTAAATTCTGAATCAAACGGTGTTCCACATTAAACTGTTCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-186, gnl|bosTau2|chr25 (5122089-5121899)
               

               
               1-186, gnl|Hg17|chr16 (5075775-5075586)
               

               
               1-186, gnl|Mm7|chr16 (4918653-4918486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr25 (5122089-5121899)
               

               
               1-186, gnl|Hg17|chr16 (5075775-5075586)
               

               
               1-186, gnl|Mm7|chr16 (4918653-4918486)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)

	1-186, gnl\|bosTau2\|chr25 (5122089-5121899)
	1-186, gnl\|Hg17\|chr16 (5075775-5075586)
	1-186, gnl\|Mm7\|chr16 (4918653-4918486)