Non-Coding RNA Search

Ss1.1-Pig1-110G21.5

Sequence:


               
               TGACTCCCTCTCCCCCGGCCCGCTCCCCCCGCCCCGCGGGGGGCCTCTGACCCCAGAGCG
GGAGGCGCCCCCGCCAGCTGCTGGGAGTGGGAGCACAGGCTCAGCAGGGCTGGTCCCCTC
CCCGCCTCCAGGCCACTCTCCTCCCCCCACCCCAACCTGGCCAAACACGCCCCGGCTCCC
TTGCTTTTCGCTCTGTCGGCCCCTCCACCTGGGATGCCCTTCCCCCTCTCTCTGCCTGGC
AGTATCTTTCCGTGTCCTGTGAGGCCCCACTCAAGTGTCACCTCCTTCCCCAGCTCCCCA
GGCAGAAATAGTTGTGTGTGTGCTTCCAGAGCCCTTGGTTCATGCTTCTACTGTGACACT
TATCTCACTGTTTTATAATTAGTTGGGCATGAGTCTGTCTCCCAAGCTAGACTGTGTCTG
AATCATGTCTGTATCCCCAGCGCCCGGTGCGGGGCCTGGCATAGAGTAGGTACTCCATAA
AAGGTGTGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTCCCTCTCCCCCGGCCCGCTCCCCCCGCCCCGCGGGGGGCCTCTGACCCCAGAGCG
GGAGGCGCCCCCGCCAGCTGCTGGGAGTGGGAGCACAGGCTCAGCAGGGCTGGTCCCCTC
CCCGCCTCCAGGCCACTCTCCTCCCCCCACCCCAACCTGGCCAAACACGCCCCGGCTCCC
TTGCTTTTCGCTCTGTCGGCCCCTCCACCTGGGATGCCCTTCCCCCTCTCTCTGCCTGGC
AGTATCTTTCCGTGTCCTGTGAGGCCCCACTCAAGTGTCACCTCCTTCCCCAGCTCCCCA
GGCAGAAATAGTTGTGTGTGTGCTTCCAGAGCCCTTGGTTCATGCTTCTACTGTGACACT
TATCTCACTGTTTTATAATTAGTTGGGCATGAGTCTGTCTCCCAAGCTAGACTGTGTCTG
AATCATGTCTGTATCCCCAGCGCCCGGTGCGGGGCCTGGCATAGAGTAGGTACTCCATAA
AAGGTGTGTTGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               209-326, - strand, RNAz p=0.676659
               

               
               213-326, - strand, RNAz p=0.595143

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-326, - strand, RNAz p=0.676659
               

               
               213-326, - strand, RNAz p=0.595143

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               92-492, gnl|bosTau2|chr19 (34509974-34509587)
               

               
               92-492, gnl|canFam2|chr9 (25796652-25796146)
               

               
               92-492, gnl|dasNov1|scaffold_3475 (88620-89111)
               

               
               92-492, gnl|echTel1|scaffold_208460 (3573-3062)
               

               
               92-492, gnl|hg17|chr17 (35503156-35503651)
               

               
               92-492, gnl|Hg17|chr17 (35503253-35503640)
               

               
               92-492, gnl|loxAfr1|scaffold_49063 (14277-13773)
               

               
               92-492, gnl|mm7|chr11 (98877559-98878050)
               

               
               92-492, gnl|Mm7|chr11 (98877661-98878039)
               

               
               92-492, gnl|oryCun1|scaffold_183318 (20768-20254)
               

               
               92-492, gnl|panTro1|chr19 (38742364-38742859)
               

               
               92-492, gnl|rheMac2|chr16 (50198150-50198644)
               

               
               92-492, gnl|rn3|chr10 (87556199-87556681)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-492, gnl|bosTau2|chr19 (34509974-34509587)
               

               
               92-492, gnl|canFam2|chr9 (25796652-25796146)
               

               
               92-492, gnl|dasNov1|scaffold_3475 (88620-89111)
               

               
               92-492, gnl|echTel1|scaffold_208460 (3573-3062)
               

               
               92-492, gnl|hg17|chr17 (35503156-35503651)
               

               
               92-492, gnl|Hg17|chr17 (35503253-35503640)
               

               
               92-492, gnl|loxAfr1|scaffold_49063 (14277-13773)
               

               
               92-492, gnl|mm7|chr11 (98877559-98878050)
               

               
               92-492, gnl|Mm7|chr11 (98877661-98878039)
               

               
               92-492, gnl|oryCun1|scaffold_183318 (20768-20254)
               

               
               92-492, gnl|panTro1|chr19 (38742364-38742859)
               

               
               92-492, gnl|rheMac2|chr16 (50198150-50198644)
               

               
               92-492, gnl|rn3|chr10 (87556199-87556681)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.543183)
               

               
               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	209-326, - strand, RNAz p=0.676659
	213-326, - strand, RNAz p=0.595143

	92-492, gnl\|bosTau2\|chr19 (34509974-34509587)
	92-492, gnl\|canFam2\|chr9 (25796652-25796146)
	92-492, gnl\|dasNov1\|scaffold_3475 (88620-89111)
	92-492, gnl\|echTel1\|scaffold_208460 (3573-3062)
	92-492, gnl\|hg17\|chr17 (35503156-35503651)
	92-492, gnl\|Hg17\|chr17 (35503253-35503640)
	92-492, gnl\|loxAfr1\|scaffold_49063 (14277-13773)
	92-492, gnl\|mm7\|chr11 (98877559-98878050)
	92-492, gnl\|Mm7\|chr11 (98877661-98878039)
	92-492, gnl\|oryCun1\|scaffold_183318 (20768-20254)
	92-492, gnl\|panTro1\|chr19 (38742364-38742859)
	92-492, gnl\|rheMac2\|chr16 (50198150-50198644)
	92-492, gnl\|rn3\|chr10 (87556199-87556681)

	fce (0.543183)
	fcc (0.39557)
	hyp (0.142837)
	cov (0.132153)
	jej (0.0989218)