Non-Coding RNA Search

Ss1.1-Pig1-111H23.5

Sequence:


               
               CGCGGCGGCGGCGTCTCCTCGCCTCGCTCCTAGCCTTCCTTTCGCTCCCGGGCCTGGCCG
CCCAGCCCGACAGGTATGGCGCTGACAGTGGATGTGGTGGGGCCGGCGCCCTGGGGCTTC
CGCATCTCCGGAGGCAGGGATTTCCACATGCCTATCACAGTGACCAAGGTCACCGAGCGG
GGCAAGGCCGAGGCTGCCGACCTCCGGCCTGGTGACATTATTGTGGCCATCAACGGGGAG
AGTGCAAAGGGCATGCTTCATGCCGAGGCCCAGAGCAAGATTCGCCAGAGCCCCTCACCC
CTGAGGCTGCAGCTGGACCGGTCTCGGGCTGCCTCTCCTGGGCAGACCAATGGGGAAAGC
TCCATGGAGGTGTTGGCTACTCGCTTTCAGGGCTCCCGGAGGGGGCACACTGACAGCCAG
TCCTCCCTGCGGTCTTCCTGCTCCAGCCAGGCTTCCCTCAGCCCCCGGCCGAGCAGCCCC
TTCTCCACCCTGCCCCCAACCAGCCCGCATACTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCGGCGGCGTCTCCTCGCCTCGCTCCTAGCCTTCCTTTCGCTCCCGGGCCTGGCCG
CCCAGCCCGACAGGTATGGCGCTGACAGTGGATGTGGTGGGGCCGGCGCCCTGGGGCTTC
CGCATCTCCGGAGGCAGGGATTTCCACATGCCTATCACAGTGACCAAGGTCACCGAGCGG
GGCAAGGCCGAGGCTGCCGACCTCCGGCCTGGTGACATTATTGTGGCCATCAACGGGGAG
AGTGCAAAGGGCATGCTTCATGCCGAGGCCCAGAGCAAGATTCGCCAGAGCCCCTCACCC
CTGAGGCTGCAGCTGGACCGGTCTCGGGCTGCCTCTCCTGGGCAGACCAATGGGGAAAGC
TCCATGGAGGTGTTGGCTACTCGCTTTCAGGGCTCCCGGAGGGGGCACACTGACAGCCAG
TCCTCCCTGCGGTCTTCCTGCTCCAGCCAGGCTTCCCTCAGCCCCCGGCCGAGCAGCCCC
TTCTCCACCCTGCCCCCAACCAGCCCGCATACTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52696099|pdb|1VB7|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52696099|pdb|1VB7|A

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               167-322, gnl|bosTau2|chr8 (30964145-30963990)
               

               
               167-322, gnl|canFam2|chr25 (37685797-37685650)
               

               
               167-322, gnl|dasNov1|scaffold_14050 (6497-6337)
               

               
               167-322, gnl|echTel1|scaffold_323844 (27593-27729)
               

               
               167-322, gnl|fr1|chrUn (13452493-13452607)
               

               
               167-322, gnl|hg17|chr8 (22494821-22494967)
               

               
               167-322, gnl|Hg17|chr8 (22494835-22494990)
               

               
               167-322, gnl|loxAfr1|scaffold_1644 (49280-49133)
               

               
               167-322, gnl|mm7|chr14 (64818990-64818844)
               

               
               167-322, gnl|Mm7|chr14 (64818974-64818819)
               

               
               167-322, gnl|monDom2|scaffold_1 (72886322-72886175)
               

               
               167-322, gnl|oryCun1|scaffold_124880 (4303-4422)
               

               
               167-322, gnl|panTro1|chr7 (23431104-23431250)
               

               
               167-322, gnl|rheMac2|chr8 (22530776-22530922)
               

               
               167-322, gnl|rn3|chr15 (50589407-50589261)
               

               
               167-322, gnl|tetNig1|chr18 (8009016-8009141)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-322, gnl|bosTau2|chr8 (30964145-30963990)
               

               
               167-322, gnl|canFam2|chr25 (37685797-37685650)
               

               
               167-322, gnl|dasNov1|scaffold_14050 (6497-6337)
               

               
               167-322, gnl|echTel1|scaffold_323844 (27593-27729)
               

               
               167-322, gnl|fr1|chrUn (13452493-13452607)
               

               
               167-322, gnl|hg17|chr8 (22494821-22494967)
               

               
               167-322, gnl|Hg17|chr8 (22494835-22494990)
               

               
               167-322, gnl|loxAfr1|scaffold_1644 (49280-49133)
               

               
               167-322, gnl|mm7|chr14 (64818990-64818844)
               

               
               167-322, gnl|Mm7|chr14 (64818974-64818819)
               

               
               167-322, gnl|monDom2|scaffold_1 (72886322-72886175)
               

               
               167-322, gnl|oryCun1|scaffold_124880 (4303-4422)
               

               
               167-322, gnl|panTro1|chr7 (23431104-23431250)
               

               
               167-322, gnl|rheMac2|chr8 (22530776-22530922)
               

               
               167-322, gnl|rn3|chr15 (50589407-50589261)
               

               
               167-322, gnl|tetNig1|chr18 (8009016-8009141)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.245128)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)

	167-322, gnl\|bosTau2\|chr8 (30964145-30963990)
	167-322, gnl\|canFam2\|chr25 (37685797-37685650)
	167-322, gnl\|dasNov1\|scaffold_14050 (6497-6337)
	167-322, gnl\|echTel1\|scaffold_323844 (27593-27729)
	167-322, gnl\|fr1\|chrUn (13452493-13452607)
	167-322, gnl\|hg17\|chr8 (22494821-22494967)
	167-322, gnl\|Hg17\|chr8 (22494835-22494990)
	167-322, gnl\|loxAfr1\|scaffold_1644 (49280-49133)
	167-322, gnl\|mm7\|chr14 (64818990-64818844)
	167-322, gnl\|Mm7\|chr14 (64818974-64818819)
	167-322, gnl\|monDom2\|scaffold_1 (72886322-72886175)
	167-322, gnl\|oryCun1\|scaffold_124880 (4303-4422)
	167-322, gnl\|panTro1\|chr7 (23431104-23431250)
	167-322, gnl\|rheMac2\|chr8 (22530776-22530922)
	167-322, gnl\|rn3\|chr15 (50589407-50589261)
	167-322, gnl\|tetNig1\|chr18 (8009016-8009141)