Non-Coding RNA Search

Ss1.1-Pig1-111M16.5

Sequence:


               
               CTGCCGCGCCCTCTGAGCTGGATTAAATATCAAGGCTTTTTGGTACAAGAAGGAAATTTT
GAACCCGCAGAAAAACTTGAAGCTGATGGACGTTGTGTGGTCCAGGGGCAGGGATGGTGG
GCTATGACCCCAGAGCAGATGGCAGGAATATCTCCAATCTCGAGGTGGCAGTGGCTGGAT
CTGTCTCTGGACTTGTCACTCGGGCGATGATCAGCCCCTTGGACGTCATCAAGATCCGTT
TCCAGCTTCAGATTGAGCGCCTGTCTCGCAGTGACCCCAATGCAAAATACCACGGGATCC
TACAGGCCGGGAGACAGATTTTGCAAGAGGAGGGCCCAACGGCGTTCTGGAAAGGACACA
TCCCAGCCCAGCTTCTCTCCATAGGCTATGGAGCTGTCCAATTTTTGTCATTTGAGGTGC
TGACCGAGCTGGTGCACAGGGCCAGTGTGCGAGATGCCCGCGACTTCTCTGTCCACTTCG
TCTGCGGCGGCCTGTCTGCCTGCGTAGCCACCCTCACCATGCATCCCTTGGATGTGCTGC
GAACCCGCTACGCAGCTCAGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGCGCCCTCTGAGCTGGATTAAATATCAAGGCTTTTTGGTACAAGAAGGAAATTTT
GAACCCGCAGAAAAACTTGAAGCTGATGGACGTTGTGTGGTCCAGGGGCAGGGATGGTGG
GCTATGACCCCAGAGCAGATGGCAGGAATATCTCCAATCTCGAGGTGGCAGTGGCTGGAT
CTGTCTCTGGACTTGTCACTCGGGCGATGATCAGCCCCTTGGACGTCATCAAGATCCGTT
TCCAGCTTCAGATTGAGCGCCTGTCTCGCAGTGACCCCAATGCAAAATACCACGGGATCC
TACAGGCCGGGAGACAGATTTTGCAAGAGGAGGGCCCAACGGCGTTCTGGAAAGGACACA
TCCCAGCCCAGCTTCTCTCCATAGGCTATGGAGCTGTCCAATTTTTGTCATTTGAGGTGC
TGACCGAGCTGGTGCACAGGGCCAGTGTGCGAGATGCCCGCGACTTCTCTGTCCACTTCG
TCTGCGGCGGCCTGTCTGCCTGCGTAGCCACCCTCACCATGCATCCCTTGGATGTGCTGC
GAACCCGCTACGCAGCTCAGGGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-245, gnl|bosTau2|chr19 (50780610-50780779)
               

               
               76-245, gnl|Hg17|chr17 (70794478-70794309)
               

               
               76-245, gnl|Mm7|chr11 (115733413-115733244)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-245, gnl|bosTau2|chr19 (50780610-50780779)
               

               
               76-245, gnl|Hg17|chr17 (70794478-70794309)
               

               
               76-245, gnl|Mm7|chr11 (115733413-115733244)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ecc (0.115035)

	76-245, gnl\|bosTau2\|chr19 (50780610-50780779)
	76-245, gnl\|Hg17\|chr17 (70794478-70794309)
	76-245, gnl\|Mm7\|chr11 (115733413-115733244)