Ss1.1-Pig1-112D01.5.5
|
GGTAAACACTTTTTTAAGTGAAGTTCTGAAAAAGGAGTAGTGGTGCCCCATGGTTCAGGG
TGTAAGATCTGGGGCTCAGCGTGGTCTCTGTCAGCCCCTCTGTGCGCAGGCGAAGCCTGG
GCCCAAGCTTGTCCCCTGGGGTTGGCAGGGCGGGTCCACGGCCTGTGTCTGGTGGGACTC
AGGTCCAGTGGGGGTAGGGCAACCATGACGGGTGCAGGGTGGTCACCATTTGAGGAAGAC
CATGCCGGCCAGGACGGCATAGCCCAGCACCAGGAAGAGGACCTTGAGCAGCCGGTCACT
CTTCTCCTCCAGTTCCTTAGCCAGGATCTCAAAGAAGGTGACAAAGAGGAATGTGCCACC
CGCCAGGCCCTGCAGCAGCACAGAAGCCACGCTGCCTGGCACTCCCCGGGCGCGCTCAAT
GCCCAGGCCCAGGCTGATGCCCAGGGGGATCATGGCGCTCACGGGAATGGCCAGCTTGGC
CGCATCCCTCAGGGCCATGGAGCTCCTGGCCATGCTGATGCCCAGGGCCACAGCCACCAG
CGTCTCATGGATGGCCACACCCACAAACAGGCTCACCACCTTCTCCCCCTCCTCCTGCAG
GCCCAGGGCCAGGCCCTCAAAGACAGAGTGGGCTGACAGGGCAAACACCAGGCTGAGGAG
CCGCATTGGGCTGGAGCGCGACAGCTCCTGGACGCTCAGCCCATGGCTGTGCCCATGGGG
CTCCCCATAGAGCGTGTGGCCCCGCGGGCCACCCATGAAGGGGCTCTCATACTCCGAGTC
ACTGCCGGCATCTGAGCTGGCGTTGAACGTCTCCAGGTCGATGAAGGCCGGCCTCTCCTT
GCGGAAGGTCAGGACCAGCTGCTCCAGGAACACAGTCATGAAGAAGCCCATCAGCACAAT
AGTCTCAGCCAAGGGGTAGTCGGTGCTGATGTGCCCGAGACTCAGGACTTTCTGGAGCTT
TTCCCTCACGGCGGGCAGTAAAGCATTGAAGCATGTGGCCAGAAAGACCCCGCCTCCAAA
GGTGTTGCACAGTGAGAGGATCTTTTTCGAGCGATGGGCCTTCTCAAAATCTGACTCGAT
GATCTTTACGGGGAGCAGGGAGCCAAGCAGCATGAAGAAGAACACGCCCACCATGCAAAG
GATTTTGGCCACCAACAACTTCATCATGGTGGCGGCCCGGACTGCTCCGGTCACCGGTCG
CGGCAGGGCCAAACCATGTGTGGGCGTGCACTCTGTCCCAGGAGGTGCTATGGGGTCCAG
CCACACAGCCGGGCGCTCATGCCTCAGCCTAGCCACGCAAGGCCTGGTGCAGAAGAGACG
CTCAGTAACCGCTTGCTGAACAAATGGATGAGCTGAAGCATGTGGACCTCTTTACCAGAC
TCAATGAGCCAAAGTGGTACAGATCTCACCCTAGACCTGTGAGTGTCCAGATCCCCCGGT
CTGTGGCGCTGGGGTGAGGGGAGTGGCCTGGACGCCCTCAAACCGAGGGCTGATCGGGCT
GGGTAAAGGTGATCGGCTCATTCATTCATCTTTTCATTCAGCACGTAATGAACGCCTTCT
GTGTGCTCCGCGCTGCACCGGGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTAAACACTTTTTTAAGTGAAGTTCTGAAAAAGGAGTAGTGGTGCCCCATGGTTCAGGG
TGTAAGATCTGGGGCTCAGCGTGGTCTCTGTCAGCCCCTCTGTGCGCAGGCGAAGCCTGG
GCCCAAGCTTGTCCCCTGGGGTTGGCAGGGCGGGTCCACGGCCTGTGTCTGGTGGGACTC
AGGTCCAGTGGGGGTAGGGCAACCATGACGGGTGCAGGGTGGTCACCATTTGAGGAAGAC
CATGCCGGCCAGGACGGCATAGCCCAGCACCAGGAAGAGGACCTTGAGCAGCCGGTCACT
CTTCTCCTCCAGTTCCTTAGCCAGGATCTCAAAGAAGGTGACAAAGAGGAATGTGCCACC
CGCCAGGCCCTGCAGCAGCACAGAAGCCACGCTGCCTGGCACTCCCCGGGCGCGCTCAAT
GCCCAGGCCCAGGCTGATGCCCAGGGGGATCATGGCGCTCACGGGAATGGCCAGCTTGGC
CGCATCCCTCAGGGCCATGGAGCTCCTGGCCATGCTGATGCCCAGGGCCACAGCCACCAG
CGTCTCATGGATGGCCACACCCACAAACAGGCTCACCACCTTCTCCCCCTCCTCCTGCAG
GCCCAGGGCCAGGCCCTCAAAGACAGAGTGGGCTGACAGGGCAAACACCAGGCTGAGGAG
CCGCATTGGGCTGGAGCGCGACAGCTCCTGGACGCTCAGCCCATGGCTGTGCCCATGGGG
CTCCCCATAGAGCGTGTGGCCCCGCGGGCCACCCATGAAGGGGCTCTCATACTCCGAGTC
ACTGCCGGCATCTGAGCTGGCGTTGAACGTCTCCAGGTCGATGAAGGCCGGCCTCTCCTT
GCGGAAGGTCAGGACCAGCTGCTCCAGGAACACAGTCATGAAGAAGCCCATCAGCACAAT
AGTCTCAGCCAAGGGGTAGTCGGTGCTGATGTGCCCGAGACTCAGGACTTTCTGGAGCTT
TTCCCTCACGGCGGGCAGTAAAGCATTGAAGCATGTGGCCAGAAAGACCCCGCCTCCAAA
GGTGTTGCACAGTGAGAGGATCTTTTTCGAGCGATGGGCCTTCTCAAAATCTGACTCGAT
GATCTTTACGGGGAGCAGGGAGCCAAGCAGCATGAAGAAGAACACGCCCACCATGCAAAG
GATTTTGGCCACCAACAACTTCATCATGGTGGCGGCCCGGACTGCTCCGGTCACCGGTCG
CGGCAGGGCCAAACCATGTGTGGGCGTGCACTCTGTCCCAGGAGGTGCTATGGGGTCCAG
CCACACAGCCGGGCGCTCATGCCTCAGCCTAGCCACGCAAGGCCTGGTGCAGAAGAGACG
CTCAGTAACCGCTTGCTGAACAAATGGATGAGCTGAAGCATGTGGACCTCTTTACCAGAC
TCAATGAGCCAAAGTGGTACAGATCTCACCCTAGACCTGTGAGTGTCCAGATCCCCCGGT
CTGTGGCGCTGGGGTGAGGGGAGTGGCCTGGACGCCCTCAAACCGAGGGCTGATCGGGCT
GGGTAAAGGTGATCGGCTCATTCATTCATCTTTTCATTCAGCACGTAATGAACGCCTTCT
GTGTGCTCCGCGCTGCACCGGGAG
|
|
gi|62751603|ref|NP_001015521.1| |
Protein identifier
|
gi|62751603|ref|NP_001015521.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
210-959, gnl|bosTau2|chr7 (17703034-17703783) |
|
210-959, gnl|Hg17|chr19 (2683729-2684485) |
|
210-959, gnl|Mm7|chr10 (80822947-80823697) |
| |
|
1415-1581, gnl|bosTau2|chr7 (17709078-17709243) |
|
1415-1581, gnl|canFam2|chr20 (59599086-59598872) |
|
1415-1581, gnl|echTel1|scaffold_42599 (1140-886) |
|
1415-1581, gnl|hg17|chr19 (2690626-2690832) |
|
1415-1581, gnl|Hg17|chr19 (2690677-2690835) |
|
1415-1581, gnl|mm7|chr10 (80828934-80829089) |
|
1415-1581, gnl|panTro1|chr20 (2816407-2816613) |
|
1415-1581, gnl|rheMac2|chr19 (2570431-2570637) |
|
1415-1581, gnl|rn3|chr7 (10161056-10160900) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
210-959, gnl|bosTau2|chr7 (17703034-17703783) |
|
210-959, gnl|Hg17|chr19 (2683729-2684485) |
|
210-959, gnl|Mm7|chr10 (80822947-80823697) |
| |
|
1415-1581, gnl|bosTau2|chr7 (17709078-17709243) |
|
1415-1581, gnl|canFam2|chr20 (59599086-59598872) |
|
1415-1581, gnl|echTel1|scaffold_42599 (1140-886) |
|
1415-1581, gnl|hg17|chr19 (2690626-2690832) |
|
1415-1581, gnl|Hg17|chr19 (2690677-2690835) |
|
1415-1581, gnl|mm7|chr10 (80828934-80829089) |
|
1415-1581, gnl|panTro1|chr20 (2816407-2816613) |
|
1415-1581, gnl|rheMac2|chr19 (2570431-2570637) |
|
1415-1581, gnl|rn3|chr7 (10161056-10160900) |
|
amn (0.417711) |
|
tes (0.207814) |
|
cov (0.132153) |
|
ecc (0.115035) |
|
amn (0.417711) |
|
tes (0.207814) |
|
cov (0.132153) |
|
ecc (0.115035) |
