Non-Coding RNA Search

Ss1.1-Pig1-112G18.5

Sequence:


               
               GGGCGCTCTGCTGGTCTCAAAATACCAAGAATTCTCCCCCCAAATTTTCTGCAGGATATT
GTACAGAATCATTGCTTATGACCATGATAGCTTTCTACACTGTATTACATAAATAAATTA
AATAAAACGACACTGGGCAAGAGTTTTCTTTGAAGGATGACTGTGGGTGTTAAATATTCA
GAGTGATTCAGGGTGGGGAAGAAGAGGCAGATTCGGTTTCTTTCACCCAGTCTAAAACAC
TTTTTTTGTGATACCAAAAATGATGGAGGTGGGAGGGACAAAATTAGGGACCAGGGAAGG
CAAGCCTGGAAGAACCCTTCAAGATTTGTATCAAATGGTGTTTTCATGTAAATAAATACG
TTGTTGGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGCTCTGCTGGTCTCAAAATACCAAGAATTCTCCCCCCAAATTTTCTGCAGGATATT
GTACAGAATCATTGCTTATGACCATGATAGCTTTCTACACTGTATTACATAAATAAATTA
AATAAAACGACACTGGGCAAGAGTTTTCTTTGAAGGATGACTGTGGGTGTTAAATATTCA
GAGTGATTCAGGGTGGGGAAGAAGAGGCAGATTCGGTTTCTTTCACCCAGTCTAAAACAC
TTTTTTTGTGATACCAAAAATGATGGAGGTGGGAGGGACAAAATTAGGGACCAGGGAAGG
CAAGCCTGGAAGAACCCTTCAAGATTTGTATCAAATGGTGTTTTCATGTAAATAAATACG
TTGTTGGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-371, gnl|bosTau2|chr1 (8157428-8157046)
               

               
               3-371, gnl|Hg17|chr21 (26175115-26174735)
               

               
               3-371, gnl|Mm7|chr16 (84953999-84953670)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-371, gnl|bosTau2|chr1 (8157428-8157046)
               

               
               3-371, gnl|Hg17|chr21 (26175115-26174735)
               

               
               3-371, gnl|Mm7|chr16 (84953999-84953670)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

	3-371, gnl\|bosTau2\|chr1 (8157428-8157046)
	3-371, gnl\|Hg17\|chr21 (26175115-26174735)
	3-371, gnl\|Mm7\|chr16 (84953999-84953670)

	hyp (0.285673)
	fce (0.271592)
	fty (0.17584)
	nco (0.161734)
	hlv (0.139256)
	med (0.116252)