Non-Coding RNA Search

Ss1.1-Pig1-112L10.5

Sequence:


               
               NCCGGAGTACGGAGAAGCAGAGCCATCTTCGCCTCAGTTTGGCTGGAGATGCTGGCTTGG
AAATGGACATGCTGGAGGACCTTGAGACCCTGTGGTTCGAGTGTGGGATTCAAGAGGAGG
ACCACAGTTGGCTCTATCTGCTGGGCCGTTCTCGTGGGCTGATGATCAAAGCCTGTGCCC
ATGCAACCTTCTTCTGCAAGCTACTCCGTAATTTGAGAGAGTTGTTCTCCAGAGGATCAT
TACAGGAGCAGCAAACGTCCAGATAGATAATCCAGATGACTTCAGCTTCTTAGGTTGGAG
AGTAACTTTGGCGTGGGGAGTGTCTTCCTACCCTTTCCACCCCACACGCAAGTATTCCTG
GTCTGAAAATGATTTCCTTTCAGTGAGCAGATTGATTAAATCATTCATTCATTCATTCAT
CCATCCATCCATTCTCTCATTCACTCTCATTGGGATGACCAGCTTGTCTCCCACGACTAC
TAATGACAAACCATTCCATGGCTGTTGGCTGAAAACGGGGTCAGTTTTTTCTTTGGGGGC
TGAGCTCACAGTGGAATGTTTCCTCACAAGAAAGTCTCCTGAGACTTTGGGGGCCCCTCT
GGCCAGAGGACTTACCTGAACACAGGAACACTGATTTGCAAAGAAGTTCTCAGTCCCGTC
CTGGCTTCTGGCACTTAACGAGGGGGTTTGTGAGGCCCTCGGACTAGGCTCCAGGATTCG
GTAGCTCTAGGTCACTCTGGGAGCATTTGTTCCCCCAGCCCTCAGTCTACCTCTCAGTTT
ACTTTTCTATGAAATTAGATTAACTCCTAGATGGTGGGACCATCTGATCTAAAGTGAACG
TGCTGTGGATACAGCACAGACCTGAGGAGGCGGACTACATCAGGAGTTTGCTGACTGGCT
GGTTGATAGGATGCACGAACCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               NCCGGAGTACGGAGAAGCAGAGCCATCTTCGCCTCAGTTTGGCTGGAGATGCTGGCTTGG
AAATGGACATGCTGGAGGACCTTGAGACCCTGTGGTTCGAGTGTGGGATTCAAGAGGAGG
ACCACAGTTGGCTCTATCTGCTGGGCCGTTCTCGTGGGCTGATGATCAAAGCCTGTGCCC
ATGCAACCTTCTTCTGCAAGCTACTCCGTAATTTGAGAGAGTTGTTCTCCAGAGGATCAT
TACAGGAGCAGCAAACGTCCAGATAGATAATCCAGATGACTTCAGCTTCTTAGGTTGGAG
AGTAACTTTGGCGTGGGGAGTGTCTTCCTACCCTTTCCACCCCACACGCAAGTATTCCTG
GTCTGAAAATGATTTCCTTTCAGTGAGCAGATTGATTAAATCATTCATTCATTCATTCAT
CCATCCATCCATTCTCTCATTCACTCTCATTGGGATGACCAGCTTGTCTCCCACGACTAC
TAATGACAAACCATTCCATGGCTGTTGGCTGAAAACGGGGTCAGTTTTTTCTTTGGGGGC
TGAGCTCACAGTGGAATGTTTCCTCACAAGAAAGTCTCCTGAGACTTTGGGGGCCCCTCT
GGCCAGAGGACTTACCTGAACACAGGAACACTGATTTGCAAAGAAGTTCTCAGTCCCGTC
CTGGCTTCTGGCACTTAACGAGGGGGTTTGTGAGGCCCTCGGACTAGGCTCCAGGATTCG
GTAGCTCTAGGTCACTCTGGGAGCATTTGTTCCCCCAGCCCTCAGTCTACCTCTCAGTTT
ACTTTTCTATGAAATTAGATTAACTCCTAGATGGTGGGACCATCTGATCTAAAGTGAACG
TGCTGTGGATACAGCACAGACCTGAGGAGGCGGACTACATCAGGAGTTTGCTGACTGGCT
GGTTGATAGGATGCACGAACCTAT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               42-368, gnl|bosTau2|chr10 (61153188-61152870)
               

               
               42-368, gnl|Hg17|chr14 (76959006-76958678)
               

               
               42-368, gnl|Mm7|chr12 (85236161-85235638)
               


               
               411-897, gnl|bosTau2|chr10 (61152780-61152282)
               

               
               411-897, gnl|Hg17|chr14 (76958589-76958083)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-368, gnl|bosTau2|chr10 (61153188-61152870)
               

               
               42-368, gnl|Hg17|chr14 (76959006-76958678)
               

               
               42-368, gnl|Mm7|chr12 (85236161-85235638)
               


               
               411-897, gnl|bosTau2|chr10 (61152780-61152282)
               

               
               411-897, gnl|Hg17|chr14 (76958589-76958083)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	42-368, gnl\|bosTau2\|chr10 (61153188-61152870)
	42-368, gnl\|Hg17\|chr14 (76959006-76958678)
	42-368, gnl\|Mm7\|chr12 (85236161-85235638)

	411-897, gnl\|bosTau2\|chr10 (61152780-61152282)
	411-897, gnl\|Hg17\|chr14 (76958589-76958083)