Non-Coding RNA Search

Ss1.1-Pig1-113B23.5

Sequence:


               
               GCAGCTGCTCCGCCAAGGTGTCCTGACCACCATGCCCCTCTTGGTCCCGGGAGCTGCCTG
CACCAGGAGCCCTGGCCTGCCTTCCTCGGCTCAGAGCAATTAATGCCAACGCCCTCTTCC
TTTATTAACCTTCTTCCCCCAGCCATGCATTCTGCTCCTCAGCCTCTTTATTAGTCTCTG
TTACACTCGGCTTCTCGGCGTGTATATATTCATTTGTGAGTGTTAACGTGTTGCTATTTT
AGAGGGTGCTACCACGGTCCCCCTCTAGCTTATAATGTCCTCTGTGCAGGAAGGGGGCTT
GTGGGGGCTTTCTTGCCCAAAATGATGATGGTGCCTTGACTTCTAAGTGAAGATAGTTTA
TTGTTTTCACCTATTGTACACAGAATACACACTCAGCATAAAGAGAAGTGTAAAGAAGAA
AGGGCAATTTAGCCTTAATGCTACCACCCAGACGTAAGAGCTGTTAATACTTAGGTTTAT
ATCTTCTGATCCTTTATTTCTGTATATATACATATATATGTGTGGGTAGATATAGGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTGCTCCGCCAAGGTGTCCTGACCACCATGCCCCTCTTGGTCCCGGGAGCTGCCTG
CACCAGGAGCCCTGGCCTGCCTTCCTCGGCTCAGAGCAATTAATGCCAACGCCCTCTTCC
TTTATTAACCTTCTTCCCCCAGCCATGCATTCTGCTCCTCAGCCTCTTTATTAGTCTCTG
TTACACTCGGCTTCTCGGCGTGTATATATTCATTTGTGAGTGTTAACGTGTTGCTATTTT
AGAGGGTGCTACCACGGTCCCCCTCTAGCTTATAATGTCCTCTGTGCAGGAAGGGGGCTT
GTGGGGGCTTTCTTGCCCAAAATGATGATGGTGCCTTGACTTCTAAGTGAAGATAGTTTA
TTGTTTTCACCTATTGTACACAGAATACACACTCAGCATAAAGAGAAGTGTAAAGAAGAA
AGGGCAATTTAGCCTTAATGCTACCACCCAGACGTAAGAGCTGTTAATACTTAGGTTTAT
ATCTTCTGATCCTTTATTTCTGTATATATACATATATATGTGTGGGTAGATATAGGTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-304, - strand, RNAz p=0.518575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-304, - strand, RNAz p=0.518575

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-311, gnl|bosTau2|chr19 (37384775-37385082)
               

               
               3-311, gnl|canFam2|chr9 (21877758-21877043)
               

               
               3-311, gnl|dasNov1|scaffold_17002 (57017-56281)
               

               
               3-311, gnl|echTel1|scaffold_313504 (64899-65610)
               

               
               3-311, gnl|hg17|chr16 (34728302-34729038)
               

               
               3-311, gnl|Hg17|chr17 (40358997-40358016)
               

               
               3-311, gnl|loxAfr1|scaffold_41567 (4644-5362)
               

               
               3-311, gnl|mm7|chr11 (103014969-103015681)
               

               
               3-311, gnl|Mm7|chr11 (103015235-103014920)
               

               
               3-311, gnl|monDom2|scaffold_18 (41635256-41634555)
               

               
               3-311, gnl|oryCun1|scaffold_184120 (10683-11416)
               

               
               3-311, gnl|panTro1|chrUn_random (8027555-8026819)
               

               
               3-311, gnl|rheMac2|chr16 (55021165-55021887)
               

               
               3-311, gnl|rn3|chr10 (92092154-92092854)
               


               
               433-539, gnl|bosTau2|chr19 (37385373-37385481)
               

               
               433-539, gnl|Hg17|chr17 (40357744-40357637)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-311, gnl|bosTau2|chr19 (37384775-37385082)
               

               
               3-311, gnl|canFam2|chr9 (21877758-21877043)
               

               
               3-311, gnl|dasNov1|scaffold_17002 (57017-56281)
               

               
               3-311, gnl|echTel1|scaffold_313504 (64899-65610)
               

               
               3-311, gnl|hg17|chr16 (34728302-34729038)
               

               
               3-311, gnl|Hg17|chr17 (40358997-40358016)
               

               
               3-311, gnl|loxAfr1|scaffold_41567 (4644-5362)
               

               
               3-311, gnl|mm7|chr11 (103014969-103015681)
               

               
               3-311, gnl|Mm7|chr11 (103015235-103014920)
               

               
               3-311, gnl|monDom2|scaffold_18 (41635256-41634555)
               

               
               3-311, gnl|oryCun1|scaffold_184120 (10683-11416)
               

               
               3-311, gnl|panTro1|chrUn_random (8027555-8026819)
               

               
               3-311, gnl|rheMac2|chr16 (55021165-55021887)
               

               
               3-311, gnl|rn3|chr10 (92092154-92092854)
               


               
               433-539, gnl|bosTau2|chr19 (37385373-37385481)
               

               
               433-539, gnl|Hg17|chr17 (40357744-40357637)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	3-311, gnl\|bosTau2\|chr19 (37384775-37385082)
	3-311, gnl\|canFam2\|chr9 (21877758-21877043)
	3-311, gnl\|dasNov1\|scaffold_17002 (57017-56281)
	3-311, gnl\|echTel1\|scaffold_313504 (64899-65610)
	3-311, gnl\|hg17\|chr16 (34728302-34729038)
	3-311, gnl\|Hg17\|chr17 (40358997-40358016)
	3-311, gnl\|loxAfr1\|scaffold_41567 (4644-5362)
	3-311, gnl\|mm7\|chr11 (103014969-103015681)
	3-311, gnl\|Mm7\|chr11 (103015235-103014920)
	3-311, gnl\|monDom2\|scaffold_18 (41635256-41634555)
	3-311, gnl\|oryCun1\|scaffold_184120 (10683-11416)
	3-311, gnl\|panTro1\|chrUn_random (8027555-8026819)
	3-311, gnl\|rheMac2\|chr16 (55021165-55021887)
	3-311, gnl\|rn3\|chr10 (92092154-92092854)

	433-539, gnl\|bosTau2\|chr19 (37385373-37385481)
	433-539, gnl\|Hg17\|chr17 (40357744-40357637)