Non-Coding RNA Search

Ss1.1-Pig1-113C12.5

Sequence:


               
               ATTTTCCCATCACATATATTTCCTTTAAAATGGTAGTTTTCCTTACACAAGTACCACCTG
AAGACAGTTTTGTTAAAAAGTACAAACATAGGCGCCTAGGTCAGCTCTCCTTCCTGGAGG
AAACCGGGTTGCTTCTCAGGTACAGAGACGACCCCATCTACACGCGGCACAGCAGCTCAC
ACCGCCTGCAGTGGCCTGTAGCCCGCTTTTCTCACTTAGTGCATCCAGGGCATCCCGCTG
GGTCGGTACCTAGAGCCCTGCCCTGCCTCTTCCCTTGCCGGGGAGCATTGTCCAGGTCTG
CTCTTACACGTGCAGGGCTCTCCGAGGCGGGTGCCAGGCCGCACGTGTGACATCGTGACA
GAATCTGAGTGCTCTGGGCCCCTCCCTCGCAGGTGCGCTCCAAGGAAGATGGCCGGCTCT
ACGCGGTGAAGCGCTCCATGTCCCCATTCCGGGGCCCCAAGGACCGGGCCCGCAAGCTGG
CCGAGGTCTGCGGCCACGAGAAGGTGGGGCAGCACCCGCGCTGCGTGCGGCTGGAACAGG
CCTGGGAGGAGGGCGGCATCCTGTACCTGCAGACGGAGCTGTGTGGGCCCAGCCTGCAGC
AGCACTGCGAGGCCTGGGGTGCCAGCCTGCCCGAGGCCCAGGTCTGGGGCTACCTGAGGG
ATGCCCTGCTGGCCCTGGCCCACCTGCATGGCCAAGGCCTGGTCCACCTTGACGTCAAGC
CTGCCAACATCTTCCTGGGGCCCCGGGGCCGCTGCAAGCTGGGTGACTTTGGGTTGCTGG
TGGAGCTGGGTGCATCTGGAGCCAGCGAGGCCCAGGAGGGAGACCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCCATCACATATATTTCCTTTAAAATGGTAGTTTTCCTTACACAAGTACCACCTG
AAGACAGTTTTGTTAAAAAGTACAAACATAGGCGCCTAGGTCAGCTCTCCTTCCTGGAGG
AAACCGGGTTGCTTCTCAGGTACAGAGACGACCCCATCTACACGCGGCACAGCAGCTCAC
ACCGCCTGCAGTGGCCTGTAGCCCGCTTTTCTCACTTAGTGCATCCAGGGCATCCCGCTG
GGTCGGTACCTAGAGCCCTGCCCTGCCTCTTCCCTTGCCGGGGAGCATTGTCCAGGTCTG
CTCTTACACGTGCAGGGCTCTCCGAGGCGGGTGCCAGGCCGCACGTGTGACATCGTGACA
GAATCTGAGTGCTCTGGGCCCCTCCCTCGCAGGTGCGCTCCAAGGAAGATGGCCGGCTCT
ACGCGGTGAAGCGCTCCATGTCCCCATTCCGGGGCCCCAAGGACCGGGCCCGCAAGCTGG
CCGAGGTCTGCGGCCACGAGAAGGTGGGGCAGCACCCGCGCTGCGTGCGGCTGGAACAGG
CCTGGGAGGAGGGCGGCATCCTGTACCTGCAGACGGAGCTGTGTGGGCCCAGCCTGCAGC
AGCACTGCGAGGCCTGGGGTGCCAGCCTGCCCGAGGCCCAGGTCTGGGGCTACCTGAGGG
ATGCCCTGCTGGCCCTGGCCCACCTGCATGGCCAAGGCCTGGTCCACCTTGACGTCAAGC
CTGCCAACATCTTCCTGGGGCCCCGGGGCCGCTGCAAGCTGGGTGACTTTGGGTTGCTGG
TGGAGCTGGGTGCATCTGGAGCCAGCGAGGCCCAGGAGGGAGACCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               534-653, - strand, RNAz p=0.9795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-653, - strand, RNAz p=0.9795

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               570-679, + strand, RNAmicro p=0.984798

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               570-679, + strand, RNAmicro p=0.984798

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-141, gnl|bosTau2|chr25 (3452657-3452520)
               

               
               1-141, gnl|canFam2|chr6 (41248888-41248791)
               

               
               1-141, gnl|hg17|chr16 (2966125-2966217)
               

               
               1-141, gnl|Hg17|chr16 (2966260-2966142)
               

               
               1-141, gnl|loxAfr1|scaffold_74893 (1654-1748)
               

               
               1-141, gnl|mm7|chr17 (21913425-21913346)
               

               
               1-141, gnl|oryCun1|scaffold_215151 (43734-43642)
               

               
               1-141, gnl|panTro1|chr18 (2850544-2850636)
               

               
               1-141, gnl|rheMac2|chr20 (3117123-3117215)
               

               
               1-141, gnl|rn3|chr10 (12990518-12990431)
               


               
               368-826, gnl|bosTau2|chr25 (3452222-3451764)
               

               
               368-826, gnl|Hg17|chr16 (2965874-2965381)
               

               
               368-826, gnl|Mm7|chr17 (21913653-21914131)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr25 (3452657-3452520)
               

               
               1-141, gnl|canFam2|chr6 (41248888-41248791)
               

               
               1-141, gnl|hg17|chr16 (2966125-2966217)
               

               
               1-141, gnl|Hg17|chr16 (2966260-2966142)
               

               
               1-141, gnl|loxAfr1|scaffold_74893 (1654-1748)
               

               
               1-141, gnl|mm7|chr17 (21913425-21913346)
               

               
               1-141, gnl|oryCun1|scaffold_215151 (43734-43642)
               

               
               1-141, gnl|panTro1|chr18 (2850544-2850636)
               

               
               1-141, gnl|rheMac2|chr20 (3117123-3117215)
               

               
               1-141, gnl|rn3|chr10 (12990518-12990431)
               


               
               368-826, gnl|bosTau2|chr25 (3452222-3451764)
               

               
               368-826, gnl|Hg17|chr16 (2965874-2965381)
               

               
               368-826, gnl|Mm7|chr17 (21913653-21914131)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-141, gnl\|bosTau2\|chr25 (3452657-3452520)
	1-141, gnl\|canFam2\|chr6 (41248888-41248791)
	1-141, gnl\|hg17\|chr16 (2966125-2966217)
	1-141, gnl\|Hg17\|chr16 (2966260-2966142)
	1-141, gnl\|loxAfr1\|scaffold_74893 (1654-1748)
	1-141, gnl\|mm7\|chr17 (21913425-21913346)
	1-141, gnl\|oryCun1\|scaffold_215151 (43734-43642)
	1-141, gnl\|panTro1\|chr18 (2850544-2850636)
	1-141, gnl\|rheMac2\|chr20 (3117123-3117215)
	1-141, gnl\|rn3\|chr10 (12990518-12990431)

	368-826, gnl\|bosTau2\|chr25 (3452222-3451764)
	368-826, gnl\|Hg17\|chr16 (2965874-2965381)
	368-826, gnl\|Mm7\|chr17 (21913653-21914131)