Non-Coding RNA Search

Ss1.1-Pig1-113D13.5

Sequence:


               
               GAATCTGACTAGGATCTATGAGGATGCAAGTTCAATCCCTGGCCTCGCTCAGTGGGTTAA
GGATCCGGTGTTTCTGTGAGCTGTGGTGTAGCTCGCAGATGCTGCTTGGATCTGATGTGG
CTATGGCTGTGGTTTCAACCCCTAGTCTGGGAACCTCCATATGCCCTGGGTTCGGCCCTA
AAAAGACAAAACAAAAAAGGGGAGGTGGAAGAGAGGTTGAAGAAACCAAAATAGTTGGCA
GGGTAGGTGGGATTTAGATGGCACCTGGGTTTTGCACCAAAGTTTCAAATACAAACAAAT
AAAAAGGAGGACCCCTTGCAAGACAACTTAGGAAGGACTTGCCAGAAAGTAGCAGCTCCT
GCTGCACACAATACAGTGCCTTCAAAATGATTCTCTGTGTGAATTGCATGCAATTTCATG
TAACCATAAAGTGTAACCTGTATGTGCATGACATGTGTCTAGAATGTGTAAAGTTCAACT
TGAGCAGAGAAGGGGCCCAGCCCTGTGGCTCTGATGGATCAGCCAGTCTGCCGAAGTCCT
TGGACTTAACGTGACTTAGGTCTGCGGCATCAGAGCCCTGTGTTTGCATTAAGCAACCAT
ATCACTGAAATCGGATCATTTCTCCCTTTCTACTTTCTTTCCTACTTTGCAGCTTTGCTG
GTTTTAACTGCTTTCACTCTTCTGCTTCTTGGTATCCTTCCTTGTTTTGAAATAAAAGAT
GAAATACTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCTGACTAGGATCTATGAGGATGCAAGTTCAATCCCTGGCCTCGCTCAGTGGGTTAA
GGATCCGGTGTTTCTGTGAGCTGTGGTGTAGCTCGCAGATGCTGCTTGGATCTGATGTGG
CTATGGCTGTGGTTTCAACCCCTAGTCTGGGAACCTCCATATGCCCTGGGTTCGGCCCTA
AAAAGACAAAACAAAAAAGGGGAGGTGGAAGAGAGGTTGAAGAAACCAAAATAGTTGGCA
GGGTAGGTGGGATTTAGATGGCACCTGGGTTTTGCACCAAAGTTTCAAATACAAACAAAT
AAAAAGGAGGACCCCTTGCAAGACAACTTAGGAAGGACTTGCCAGAAAGTAGCAGCTCCT
GCTGCACACAATACAGTGCCTTCAAAATGATTCTCTGTGTGAATTGCATGCAATTTCATG
TAACCATAAAGTGTAACCTGTATGTGCATGACATGTGTCTAGAATGTGTAAAGTTCAACT
TGAGCAGAGAAGGGGCCCAGCCCTGTGGCTCTGATGGATCAGCCAGTCTGCCGAAGTCCT
TGGACTTAACGTGACTTAGGTCTGCGGCATCAGAGCCCTGTGTTTGCATTAAGCAACCAT
ATCACTGAAATCGGATCATTTCTCCCTTTCTACTTTCTTTCCTACTTTGCAGCTTTGCTG
GTTTTAACTGCTTTCACTCTTCTGCTTCTTGGTATCCTTCCTTGTTTTGAAATAAAAGAT
GAAATACTTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               374-511, - strand, RNAz p=0.98765

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-511, - strand, RNAz p=0.98765

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_018212, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018212, -

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               197-737, gnl|bosTau2|chr16 (16810538-16811075)
               

               
               197-737, gnl|canFam2|chr7 (42227258-42226758)
               

               
               197-737, gnl|echTel1|scaffold_313438 (81330-80835)
               

               
               197-737, gnl|hg17|chr1 (221981219-221981852)
               

               
               197-737, gnl|Hg17|chr1 (221981800-221981263)
               

               
               197-737, gnl|loxAfr1|scaffold_4072 (12331-12947)
               

               
               197-737, gnl|mm7|chr1 (181881029-181881630)
               

               
               197-737, gnl|Mm7|chr1 (181881580-181881073)
               

               
               197-737, gnl|monDom2|scaffold_13 (32971496-32972119)
               

               
               197-737, gnl|oryCun1|scaffold_202447 (318354-317819)
               

               
               197-737, gnl|panTro1|chr1 (205795241-205795874)
               

               
               197-737, gnl|rheMac2|chr1 (144907886-144907256)
               

               
               197-737, gnl|rn3|chr13 (98100096-98100700)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-737, gnl|bosTau2|chr16 (16810538-16811075)
               

               
               197-737, gnl|canFam2|chr7 (42227258-42226758)
               

               
               197-737, gnl|echTel1|scaffold_313438 (81330-80835)
               

               
               197-737, gnl|hg17|chr1 (221981219-221981852)
               

               
               197-737, gnl|Hg17|chr1 (221981800-221981263)
               

               
               197-737, gnl|loxAfr1|scaffold_4072 (12331-12947)
               

               
               197-737, gnl|mm7|chr1 (181881029-181881630)
               

               
               197-737, gnl|Mm7|chr1 (181881580-181881073)
               

               
               197-737, gnl|monDom2|scaffold_13 (32971496-32972119)
               

               
               197-737, gnl|oryCun1|scaffold_202447 (318354-317819)
               

               
               197-737, gnl|panTro1|chr1 (205795241-205795874)
               

               
               197-737, gnl|rheMac2|chr1 (144907886-144907256)
               

               
               197-737, gnl|rn3|chr13 (98100096-98100700)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	197-737, gnl\|bosTau2\|chr16 (16810538-16811075)
	197-737, gnl\|canFam2\|chr7 (42227258-42226758)
	197-737, gnl\|echTel1\|scaffold_313438 (81330-80835)
	197-737, gnl\|hg17\|chr1 (221981219-221981852)
	197-737, gnl\|Hg17\|chr1 (221981800-221981263)
	197-737, gnl\|loxAfr1\|scaffold_4072 (12331-12947)
	197-737, gnl\|mm7\|chr1 (181881029-181881630)
	197-737, gnl\|Mm7\|chr1 (181881580-181881073)
	197-737, gnl\|monDom2\|scaffold_13 (32971496-32972119)
	197-737, gnl\|oryCun1\|scaffold_202447 (318354-317819)
	197-737, gnl\|panTro1\|chr1 (205795241-205795874)
	197-737, gnl\|rheMac2\|chr1 (144907886-144907256)
	197-737, gnl\|rn3\|chr13 (98100096-98100700)

	fbs (0.350693)
	ssp (0.271039)
	nms (0.213858)
	fcc (0.197785)
	eye (0.170503)
	fhi (0.169578)
	nmm (0.132802)
	ese (0.126502)
	jca (0.11396)
	ldo (0.0970026)