Non-Coding RNA Search

Ss1.1-Pig1-113D16.5

Sequence:


               
               TAGAAAGGCACTGTTTGGCCTAAGATTCCCCAGCATCGCTTCCACCCAAAACCAGAACTG
GATTCCAGGCTCCTGTCTCCTTGGCCCAGGACGTGAATCATGATTACACGCTGATGGCAA
AGGCTTCTTGGCAAGTCCCGCAGAAGCTGAAGGTCCCACTCCATGGAGATATGCTGGAAG
ATAGAGGCAGCCAACGGCTCCAGGGACGACTTGGATTTCAACCCCCTGAAGGACTACATG
GTCCTGAGCAGTTCCCAAAAGATCGCCATTGCGGTGCTGTGCACCCCTCTGGGCCTGCTC
AGCGCCCTGGAGAACCTGGTCGTGCTCTACCTGATCCTGTCCTCACACCGGCTCCGCAGG
AAGCCCTCTTACCTGTTCATCAGCAGCTTGGCTGGGGCTGACTTTCTGGCCAGTGTGGTC
TTTGCCTGCAGCTTTGTAAATTTCCACGTCTTCCATGGTGTGGATTCCAAAGCTGTCTTC
CTGCTGAAGATCGGCAGTGTGACTATGACCTTCACGGCCTCCGTAGGCAGCCTGCTGCTG
ACAGCCATTGACCGCTACCTCTGTCTGTGCTACCCACCTACATACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAAGGCACTGTTTGGCCTAAGATTCCCCAGCATCGCTTCCACCCAAAACCAGAACTG
GATTCCAGGCTCCTGTCTCCTTGGCCCAGGACGTGAATCATGATTACACGCTGATGGCAA
AGGCTTCTTGGCAAGTCCCGCAGAAGCTGAAGGTCCCACTCCATGGAGATATGCTGGAAG
ATAGAGGCAGCCAACGGCTCCAGGGACGACTTGGATTTCAACCCCCTGAAGGACTACATG
GTCCTGAGCAGTTCCCAAAAGATCGCCATTGCGGTGCTGTGCACCCCTCTGGGCCTGCTC
AGCGCCCTGGAGAACCTGGTCGTGCTCTACCTGATCCTGTCCTCACACCGGCTCCGCAGG
AAGCCCTCTTACCTGTTCATCAGCAGCTTGGCTGGGGCTGACTTTCTGGCCAGTGTGGTC
TTTGCCTGCAGCTTTGTAAATTTCCACGTCTTCCATGGTGTGGATTCCAAAGCTGTCTTC
CTGCTGAAGATCGGCAGTGTGACTATGACCTTCACGGCCTCCGTAGGCAGCCTGCTGCTG
ACAGCCATTGACCGCTACCTCTGTCTGTGCTACCCACCTACATACAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               195-314, - strand, RNAz p=0.976065
               

               
               355-514, - strand, RNAz p=0.83022

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.976065
               

               
               355-514, - strand, RNAz p=0.83022

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               418-493, + strand, RNAmicro p=0.955593

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               418-493, + strand, RNAmicro p=0.955593

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-588, gnl|bosTau2|chr2 (82306964-82307435)
               

               
               117-588, gnl|Hg17|chr1 (23947459-23946988)
               

               
               117-588, gnl|Mm7|chr4 (135295003-135295475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-588, gnl|bosTau2|chr2 (82306964-82307435)
               

               
               117-588, gnl|Hg17|chr1 (23947459-23946988)
               

               
               117-588, gnl|Mm7|chr4 (135295003-135295475)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	195-314, - strand, RNAz p=0.976065
	355-514, - strand, RNAz p=0.83022

	117-588, gnl\|bosTau2\|chr2 (82306964-82307435)
	117-588, gnl\|Hg17\|chr1 (23947459-23946988)
	117-588, gnl\|Mm7\|chr4 (135295003-135295475)