Non-Coding RNA Search

Ss1.1-Pig1-113F03.5

Sequence:


               
               GCAACCCCCTAGGTTTCTCCTCCTCTCTGCACAGCCTGGAGATGTCCAAGAACATGAGTG
ACGACATGAAGGAGGTGGCCTTCTCCGTCAGGAACACCGTCTGCTCTGGCCCAGGTGAGC
CTCCAGTCAAGGACATAGCCTGTCAGACCAACGGGTCCCGGACGACGGGGACACAGACTG
TTCAGACCATCAGCATCGGCCTGCAGACCGAGGCCCTGCGGGGCAGCGCCATCACCAGCA
GCCCCCACAAGTGTCTCACGCCCAAGGCAGGCAGTGGTGCCACCCCCGCATCCTCTCCAT
CACGCGGCCTCAGGAGCAGGCAGGTGGCCCCAGCCATCGAGAAGGTGCAGGCCAAGTTTG
AACGCACGTGCTGCTCCCCCAAGTATGGGTCTCCCAAGCTGCAGAGGAAGCCCCTCCCTA
AAGCTGAGCAGCCAAATAGGACTTCCCCAGGGCTGGGGCAGAAGGGGTGCAGTGAGTCAG
CCTGGGCCCGCTCCACCACCACGCGGGAGAGCCCTGTGCACACCGCCATCAACGATGGCC
TCTCCAGCCTCTTCAACATCATCGACCACAGCCCTGTGGTGCAGGACCCCTTCCAGAAGG
GGCTGCGGGCTGCCAGTCGGTCTCGCTCAGCAGAGCCCCGGCCAGAACTGGGCCCAGGCC
AGGAAACCAGCCCCAGCTCCCGGGGACGGTCACCCAGCCCCATCGGGGGCGGCTCTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACCCCCTAGGTTTCTCCTCCTCTCTGCACAGCCTGGAGATGTCCAAGAACATGAGTG
ACGACATGAAGGAGGTGGCCTTCTCCGTCAGGAACACCGTCTGCTCTGGCCCAGGTGAGC
CTCCAGTCAAGGACATAGCCTGTCAGACCAACGGGTCCCGGACGACGGGGACACAGACTG
TTCAGACCATCAGCATCGGCCTGCAGACCGAGGCCCTGCGGGGCAGCGCCATCACCAGCA
GCCCCCACAAGTGTCTCACGCCCAAGGCAGGCAGTGGTGCCACCCCCGCATCCTCTCCAT
CACGCGGCCTCAGGAGCAGGCAGGTGGCCCCAGCCATCGAGAAGGTGCAGGCCAAGTTTG
AACGCACGTGCTGCTCCCCCAAGTATGGGTCTCCCAAGCTGCAGAGGAAGCCCCTCCCTA
AAGCTGAGCAGCCAAATAGGACTTCCCCAGGGCTGGGGCAGAAGGGGTGCAGTGAGTCAG
CCTGGGCCCGCTCCACCACCACGCGGGAGAGCCCTGTGCACACCGCCATCAACGATGGCC
TCTCCAGCCTCTTCAACATCATCGACCACAGCCCTGTGGTGCAGGACCCCTTCCAGAAGG
GGCTGCGGGCTGCCAGTCGGTCTCGCTCAGCAGAGCCCCGGCCAGAACTGGGCCCAGGCC
AGGAAACCAGCCCCAGCTCCCGGGGACGGTCACCCAGCCCCATCGGGGGCGGCTCTGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               591-710, - strand, RNAz p=0.632859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               591-710, - strand, RNAz p=0.632859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-720, gnl|bosTau2|chr24 (28674731-28675432)
               

               
               7-720, gnl|Hg17|chr18 (8815287-8816015)
               

               
               7-720, gnl|Mm7|chr17 (64568089-64567394)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-720, gnl|bosTau2|chr24 (28674731-28675432)
               

               
               7-720, gnl|Hg17|chr18 (8815287-8816015)
               

               
               7-720, gnl|Mm7|chr17 (64568089-64567394)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	7-720, gnl\|bosTau2\|chr24 (28674731-28675432)
	7-720, gnl\|Hg17\|chr18 (8815287-8816015)
	7-720, gnl\|Mm7\|chr17 (64568089-64567394)