Non-Coding RNA Search

Ss1.1-Pig1-113I13.5

Sequence:


               
               CCTGCCCCTGGTAAACCACAGCTCCGGAGCCCTGGTGAAGTGTGGCCACAGGGAGCTCCG
AGGGGACTTCGTGGCCCCAGAGCAGCTGTGGCCCTATGGAGAGGACGTGCCTTTTCAGGA
CGACCTCATGCCCGTGTATGATGAGAAGATTGACATCTGGAAGATTCCAGACGTCTCCAG
TTTCCTTCTGGGGCACGTGGAAGGGAGCGACATGGTCCGGTTCCACTTGTTTGACATTCA
CAAGGCGTGTAAGAGCCAGACGCCTGCAGAGAGACCCACCGCTCAGAACATTCTGGACAC
TTACCAGAACGTCTTGAATCTGCTCAGAGACACCGCGACTTCTCAGACCAGAGAGATGCT
GTAGAATCCAGTACAGTGAGAGCTGGAGTCAAGGAAGGCTGGAGGAGTTACAGCGGCTCC
GCTCTGACCTGGGGTCTGTGTTATTCCCGTGTGCTGCTTCCTCTCTGGCCACGTGCTCGT
GTGAGCTTCCCTCTCCTGGCCACCTGGGCGACGGCACACTCAGCCCTGTGTAAGCCTGGC
TCCAGGCGGAGATGCAGAGAAGCAGTGAACCTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCCCTGGTAAACCACAGCTCCGGAGCCCTGGTGAAGTGTGGCCACAGGGAGCTCCG
AGGGGACTTCGTGGCCCCAGAGCAGCTGTGGCCCTATGGAGAGGACGTGCCTTTTCAGGA
CGACCTCATGCCCGTGTATGATGAGAAGATTGACATCTGGAAGATTCCAGACGTCTCCAG
TTTCCTTCTGGGGCACGTGGAAGGGAGCGACATGGTCCGGTTCCACTTGTTTGACATTCA
CAAGGCGTGTAAGAGCCAGACGCCTGCAGAGAGACCCACCGCTCAGAACATTCTGGACAC
TTACCAGAACGTCTTGAATCTGCTCAGAGACACCGCGACTTCTCAGACCAGAGAGATGCT
GTAGAATCCAGTACAGTGAGAGCTGGAGTCAAGGAAGGCTGGAGGAGTTACAGCGGCTCC
GCTCTGACCTGGGGTCTGTGTTATTCCCGTGTGCTGCTTCCTCTCTGGCCACGTGCTCGT
GTGAGCTTCCCTCTCCTGGCCACCTGGGCGACGGCACACTCAGCCCTGTGTAAGCCTGGC
TCCAGGCGGAGATGCAGAGAAGCAGTGAACCTGGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-241, - strand, RNAz p=0.9221
               

               
               282-427, + strand, RNAz p=0.999961

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-241, - strand, RNAz p=0.9221
               

               
               282-427, + strand, RNAz p=0.999961

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032237, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032237, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-427, gnl|bosTau2|chr2 (42425853-42425429)
               

               
               3-427, gnl|Hg17|chr8 (43096816-43097242)
               

               
               3-427, gnl|Mm7|chr8 (24739724-24739356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-427, gnl|bosTau2|chr2 (42425853-42425429)
               

               
               3-427, gnl|Hg17|chr8 (43096816-43097242)
               

               
               3-427, gnl|Mm7|chr8 (24739724-24739356)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	3-241, - strand, RNAz p=0.9221
	282-427, + strand, RNAz p=0.999961

	3-427, gnl\|bosTau2\|chr2 (42425853-42425429)
	3-427, gnl\|Hg17\|chr8 (43096816-43097242)
	3-427, gnl\|Mm7\|chr8 (24739724-24739356)