Non-Coding RNA Search

Ss1.1-Pig1-113P09.5

Sequence:


               
               CCAGAAAGAGCAGGAGATTCTCCAACTGAAGAAGGTGACCTTGAGGGCCGGGCAGGACTC
TGAGTACCAGCTTCCGGCTGCAGAGGGAATACCAAATGGTGAGATGGGGGCCATGGATCT
AGGGCAGCTACAGAAGGAAAAACAGGACTTGGAGCAGCAACTTCTAGAGAAAAACAAGAC
CATAAAGCAGATGCAGCAGAGGATGCTGGAACTCAAAAAGACTCTACAGAAGGAACTGAA
AATCAGACCTGATAACGAGCTTTTTGACGTGCGGGAGAAGCCCGGGCCCGAGATGCCAAA
CATGGCCCCTTGTGTCACGAATAACGCTGACCTGACTGATGCCCGTGAGATCAACTTCGA
GTACCTCAAACATGTGGTTTTAAAATTCATGTCCTGTCGCGAATCTGAGGCTTTTCACCT
TATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCACAAGAGGAGGAGAACATGCTCAAAGA
AACCCTGGAGTATAAGATGTCATGGTTTGGGTCCAAGCCAGCTCCCAAGGGCAGCATCCG
GCCATCCATCTCCAGCCCCCGGATACCGTGGTCCTAGGCGGAACTACCCAAGGATGGAGC
TCCAAGGGCTGACACTTTTTCTGTGAAAAGAACACTGACACACCAGTCTGGGTGGGTTTT
TAATCACTGTAACTGCAGTATTTTGTACAAGCATCTAAACATTGTTTACAAGACTTAAGG
CCCACTTCCCTACAGACTGATAGGAACTTCGGGAGGTAGCTGATCCTGTTATTCTGGTCA
CCACACGGGAGGGACCTGACACTACCCACATCTCCGCAGTGCTGCTAAAACCCCAGCTCT
GGCCAGCACCCATCTGCACCTGAGTCCTCTTTCAATGTTAGCACTTAAAGCTGAAGCCAT
CAGCATGTCAGAGGGAAGGCGGCTGCTGCATTGGGTAGTGGCGATGCTGGACAAAGACAG
CCCTTCCAAACAATGCCCAGCAGGCCAAACCCACCTGCTTCTGCCACGAAGCGCCAACGT
GGTGGGGCTGGCTTTTAAAAACTCCCCTTCCCTGTTAGGATGTTTGGGTTCGGATGAGTT
TAAGAGGTTTTTTAATCCTTTCTCTCTGGGAAACGTTATTCCACCTTGTTTCTCAAACCA
CCTAGAACTTTAGATGTGTCCATCTCTAAGGTATTCTGGGGCCATGTGAATTAATGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAAAGAGCAGGAGATTCTCCAACTGAAGAAGGTGACCTTGAGGGCCGGGCAGGACTC
TGAGTACCAGCTTCCGGCTGCAGAGGGAATACCAAATGGTGAGATGGGGGCCATGGATCT
AGGGCAGCTACAGAAGGAAAAACAGGACTTGGAGCAGCAACTTCTAGAGAAAAACAAGAC
CATAAAGCAGATGCAGCAGAGGATGCTGGAACTCAAAAAGACTCTACAGAAGGAACTGAA
AATCAGACCTGATAACGAGCTTTTTGACGTGCGGGAGAAGCCCGGGCCCGAGATGCCAAA
CATGGCCCCTTGTGTCACGAATAACGCTGACCTGACTGATGCCCGTGAGATCAACTTCGA
GTACCTCAAACATGTGGTTTTAAAATTCATGTCCTGTCGCGAATCTGAGGCTTTTCACCT
TATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCACAAGAGGAGGAGAACATGCTCAAAGA
AACCCTGGAGTATAAGATGTCATGGTTTGGGTCCAAGCCAGCTCCCAAGGGCAGCATCCG
GCCATCCATCTCCAGCCCCCGGATACCGTGGTCCTAGGCGGAACTACCCAAGGATGGAGC
TCCAAGGGCTGACACTTTTTCTGTGAAAAGAACACTGACACACCAGTCTGGGTGGGTTTT
TAATCACTGTAACTGCAGTATTTTGTACAAGCATCTAAACATTGTTTACAAGACTTAAGG
CCCACTTCCCTACAGACTGATAGGAACTTCGGGAGGTAGCTGATCCTGTTATTCTGGTCA
CCACACGGGAGGGACCTGACACTACCCACATCTCCGCAGTGCTGCTAAAACCCCAGCTCT
GGCCAGCACCCATCTGCACCTGAGTCCTCTTTCAATGTTAGCACTTAAAGCTGAAGCCAT
CAGCATGTCAGAGGGAAGGCGGCTGCTGCATTGGGTAGTGGCGATGCTGGACAAAGACAG
CCCTTCCAAACAATGCCCAGCAGGCCAAACCCACCTGCTTCTGCCACGAAGCGCCAACGT
GGTGGGGCTGGCTTTTAAAAACTCCCCTTCCCTGTTAGGATGTTTGGGTTCGGATGAGTT
TAAGAGGTTTTTTAATCCTTTCTCTCTGGGAAACGTTATTCCACCTTGTTTCTCAAACCA
CCTAGAACTTTAGATGTGTCCATCTCTAAGGTATTCTGGGGCCATGTGAATTAATGAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               614-730, + strand, RNAz p=0.596584

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               614-730, + strand, RNAz p=0.596584

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002077, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002077, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               33-178, gnl|bosTau2|chr11 (73185137-73184989)
               

               
               33-178, gnl|Hg17|chr9 (124730231-124730086)
               

               
               33-178, gnl|Mm7|chr2 (39030157-39030012)
               


               
               238-410, gnl|bosTau2|chr11 (73181265-73181093)
               

               
               238-410, gnl|Hg17|chr9 (124723788-124723616)
               

               
               238-410, gnl|Mm7|chr2 (39026965-39026793)
               


               
               495-1200, gnl|bosTau2|chr11 (73180050-73179348)
               

               
               495-1200, gnl|Hg17|chr9 (124722445-124721766)
               

               
               495-1200, gnl|Mm7|chr2 (39025802-39025164)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-178, gnl|bosTau2|chr11 (73185137-73184989)
               

               
               33-178, gnl|Hg17|chr9 (124730231-124730086)
               

               
               33-178, gnl|Mm7|chr2 (39030157-39030012)
               


               
               238-410, gnl|bosTau2|chr11 (73181265-73181093)
               

               
               238-410, gnl|Hg17|chr9 (124723788-124723616)
               

               
               238-410, gnl|Mm7|chr2 (39026965-39026793)
               


               
               495-1200, gnl|bosTau2|chr11 (73180050-73179348)
               

               
               495-1200, gnl|Hg17|chr9 (124722445-124721766)
               

               
               495-1200, gnl|Mm7|chr2 (39025802-39025164)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               eru (0.120048)

	33-178, gnl\|bosTau2\|chr11 (73185137-73184989)
	33-178, gnl\|Hg17\|chr9 (124730231-124730086)
	33-178, gnl\|Mm7\|chr2 (39030157-39030012)

	238-410, gnl\|bosTau2\|chr11 (73181265-73181093)
	238-410, gnl\|Hg17\|chr9 (124723788-124723616)
	238-410, gnl\|Mm7\|chr2 (39026965-39026793)

	495-1200, gnl\|bosTau2\|chr11 (73180050-73179348)
	495-1200, gnl\|Hg17\|chr9 (124722445-124721766)
	495-1200, gnl\|Mm7\|chr2 (39025802-39025164)