Non-Coding RNA Search

Ss1.1-Pig1-113P12.5

Sequence:


               
               ATTTGGACAACAGCGGCTTAAAGGTCAACCTGTTTGAGGTCCCTCTGGAGGTGCAGTATG
TGAGGCTGGTGCCCATCATCTGCCACCGGGGCTGCACACTCCGCTTTGAGCTCCTTGGCT
GTGAGCTGAGTGGATGCGCTGAACCCCTAGGCCTGAAGGACAACACCATCCCCAACAAGC
AGATCACAGCCTCCAGCTTCTACAGGACCTGGGGCCTGAGTGCCTTTAGCTGGTATCCCT
TCTATGCGCGGCTGGATAATCAGGGCAAGTTCAATGCCTGGACCGCCCAGTCCAACAGTG
CCTCTGAGTGGCTGCAGATTGACCTGGGCTCCCAGAGGCGAGTAACTGGCATCATCACCC
AGGGAGCCCGAGATTTTGGCCACATCCAGTATGTGGCAGCCTACAAGGTGGCCTACAGCG
ACGATGGTGTGAGCTGGACCGAGTACAGGGACCAGGGGGCCCTGGAAGGCAAGATCTTCC
CTGGCAACTTGGACAACAATTCCCACAAGAAGAACATGTTTGAGACGCCTTTCCTGACCC
GCTTTGTGCGCATCCTGCCTGTGGCCTGGCACAACCGCATCACCCTTCGTGTGGAGCTGC
TGGGCTGTTAGCGGGTGGGGGGGCCCGGGTGAAGTGGCGGGCAGGGCCGTGGGGGCACCC
GCCCGTCCCCTGGTCCTCCTGGCCTTCTGGGACCTGCTGCCTCCTCCTCCTGCCCTCCCG
ATTGTAGCTGACCTGGGGGCGGGGGGTTCAGTCACCTCTCCCTCCCTCCTTCCCTCCCCC
TTCCCCCCACATGCCCCTGGTGCCCGGCCCTCATGCCATCCTGTTTTCTTAGGCATGGTG
GGAGTCTGAGATAGACAGGGAAGGGCGAAGGCGGGGATATGGGTCACCTGCACCTCTCTG
GTCCCTGCTCCCGGCTTCTTGCCTCCCTGGCCCATCACCCACCCTCCTCGTTCCCCTGGC
CCTGAGGCCCCAGCCCAGAGAGAAGATCTCTTCTTGCCCCTCAGCCGTGAGGCCCGATGT
CACCACTCCTGTTGCTGCCACCAAGCCCCCCAACCCCTCTCCCACTTCCCTCCAGGGACC
TATCTTGCCCCTTGTCCTGAAGCCTCGGAGGGTGGATGTGGGGGGCCCTCTGTACCGATT
CTGCACCCCAGAGTACACAGGCAACTTCCAAAATATATTTATATCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGGACAACAGCGGCTTAAAGGTCAACCTGTTTGAGGTCCCTCTGGAGGTGCAGTATG
TGAGGCTGGTGCCCATCATCTGCCACCGGGGCTGCACACTCCGCTTTGAGCTCCTTGGCT
GTGAGCTGAGTGGATGCGCTGAACCCCTAGGCCTGAAGGACAACACCATCCCCAACAAGC
AGATCACAGCCTCCAGCTTCTACAGGACCTGGGGCCTGAGTGCCTTTAGCTGGTATCCCT
TCTATGCGCGGCTGGATAATCAGGGCAAGTTCAATGCCTGGACCGCCCAGTCCAACAGTG
CCTCTGAGTGGCTGCAGATTGACCTGGGCTCCCAGAGGCGAGTAACTGGCATCATCACCC
AGGGAGCCCGAGATTTTGGCCACATCCAGTATGTGGCAGCCTACAAGGTGGCCTACAGCG
ACGATGGTGTGAGCTGGACCGAGTACAGGGACCAGGGGGCCCTGGAAGGCAAGATCTTCC
CTGGCAACTTGGACAACAATTCCCACAAGAAGAACATGTTTGAGACGCCTTTCCTGACCC
GCTTTGTGCGCATCCTGCCTGTGGCCTGGCACAACCGCATCACCCTTCGTGTGGAGCTGC
TGGGCTGTTAGCGGGTGGGGGGGCCCGGGTGAAGTGGCGGGCAGGGCCGTGGGGGCACCC
GCCCGTCCCCTGGTCCTCCTGGCCTTCTGGGACCTGCTGCCTCCTCCTCCTGCCCTCCCG
ATTGTAGCTGACCTGGGGGCGGGGGGTTCAGTCACCTCTCCCTCCCTCCTTCCCTCCCCC
TTCCCCCCACATGCCCCTGGTGCCCGGCCCTCATGCCATCCTGTTTTCTTAGGCATGGTG
GGAGTCTGAGATAGACAGGGAAGGGCGAAGGCGGGGATATGGGTCACCTGCACCTCTCTG
GTCCCTGCTCCCGGCTTCTTGCCTCCCTGGCCCATCACCCACCCTCCTCGTTCCCCTGGC
CCTGAGGCCCCAGCCCAGAGAGAAGATCTCTTCTTGCCCCTCAGCCGTGAGGCCCGATGT
CACCACTCCTGTTGCTGCCACCAAGCCCCCCAACCCCTCTCCCACTTCCCTCCAGGGACC
TATCTTGCCCCTTGTCCTGAAGCCTCGGAGGGTGGATGTGGGGGGCCCTCTGTACCGATT
CTGCACCCCAGAGTACACAGGCAACTTCCAAAATATATTTATATCACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|2136760|pir||S65138

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|2136760|pir||S65138

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               132-332, gnl|bosTau2|chr21 (14813751-14813950)
               

               
               132-332, gnl|Hg17|chr15 (87245971-87245772)
               

               
               132-332, gnl|Mm7|chr7 (75000044-74999856)
               


               
               472-1124, gnl|bosTau2|chr21 (14815244-14815889)
               

               
               472-1124, gnl|Hg17|chr15 (87243769-87243061)
               

               
               472-1124, gnl|Mm7|chr7 (74997750-74997081)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-332, gnl|bosTau2|chr21 (14813751-14813950)
               

               
               132-332, gnl|Hg17|chr15 (87245971-87245772)
               

               
               132-332, gnl|Mm7|chr7 (75000044-74999856)
               


               
               472-1124, gnl|bosTau2|chr21 (14815244-14815889)
               

               
               472-1124, gnl|Hg17|chr15 (87243769-87243061)
               

               
               472-1124, gnl|Mm7|chr7 (74997750-74997081)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               cga (1.95367)
               

               
               mcp (0.853242)
               

               
               hyp (0.42851)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               csp (0.322373)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (1.95367)
               

               
               mcp (0.853242)
               

               
               hyp (0.42851)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               csp (0.322373)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	132-332, gnl\|bosTau2\|chr21 (14813751-14813950)
	132-332, gnl\|Hg17\|chr15 (87245971-87245772)
	132-332, gnl\|Mm7\|chr7 (75000044-74999856)

	472-1124, gnl\|bosTau2\|chr21 (14815244-14815889)
	472-1124, gnl\|Hg17\|chr15 (87243769-87243061)
	472-1124, gnl\|Mm7\|chr7 (74997750-74997081)

	cga (1.95367)
	mcp (0.853242)
	hyp (0.42851)
	cov (0.396458)
	nep (0.36785)
	csp (0.322373)
	mas (0.210305)
	cty (0.20816)
	fcc (0.197785)
	fty (0.17584)
	fhi (0.169578)
	nco (0.161734)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)