Ss1.1-Pig1-114C13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGAAGCAGTCGGAGCCGAAGGATTCAGAACAAGGCTCGGGGCAGAGCAAGGAGCACA GACCGGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCG AGCGGCTGCAAGGAGCTGTGGTCCCCCCTGTTAACGGCGTCGAGATTCACGTGGACGCCG TGCTGCCGGTGCCGCCCATTGAATTTGGAGTCAATCCAAAAGACTCTGATTTCAGCTTGC AGCCTGGTTCTGCTTCTGGGCCCACAGGGAATCCAGTTGTCAAACTTCAGGACGCATTGG CTAGTAACGCGGGGTTGGCCCAGAGTATCCCCATCCTCCGGCGGGATCACCACATCCAGA GAGCCATCGGCCTCTCCCAAATGTCCTTCCCCACCGCCGACCTCACTCTGAAGATGGAGT CTGCACGCAAGGCTTGGGAAAACTCGCCCAGTTTGCCGGAGCAGAGCTCTCCAGGGGGTG CCGGCTCGGGCCTCCAGCCCCCGTCCTCGGGGGGAGCCTCCAGTGGGGTCAGCTACAGCT CCTTCGGGGGAGTCTCCATGCCACCCCTGCCTGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGAAGCAGTCGGAGCCGAAGGATTCAGAACAAGGCTCGGGGCAGAGCAAGGAGCACA GACCGGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCG AGCGGCTGCAAGGAGCTGTGGTCCCCCCTGTTAACGGCGTCGAGATTCACGTGGACGCCG TGCTGCCGGTGCCGCCCATTGAATTTGGAGTCAATCCAAAAGACTCTGATTTCAGCTTGC AGCCTGGTTCTGCTTCTGGGCCCACAGGGAATCCAGTTGTCAAACTTCAGGACGCATTGG CTAGTAACGCGGGGTTGGCCCAGAGTATCCCCATCCTCCGGCGGGATCACCACATCCAGA GAGCCATCGGCCTCTCCCAAATGTCCTTCCCCACCGCCGACCTCACTCTGAAGATGGAGT CTGCACGCAAGGCTTGGGAAAACTCGCCCAGTTTGCCGGAGCAGAGCTCTCCAGGGGGTG CCGGCTCGGGCCTCCAGCCCCCGTCCTCGGGGGGAGCCTCCAGTGGGGTCAGCTACAGCT CCTTCGGGGGAGTCTCCATGCCACCCCTGCCTGTGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-191, - strand, RNAz p=0.599996 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-191, - strand, RNAz p=0.599996 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 21-220, gnl|bosTau2|chr11 (82058559-82058758) | |
| 21-220, gnl|canFam2|chr9 (55998525-55998303) | |
| 21-220, gnl|danRer3|chr9 (430940-430722) | |
| 21-220, gnl|dasNov1|scaffold_8624 (43766-43566) | |
| 21-220, gnl|echTel1|scaffold_320314 (79569-79790) | |
| 21-220, gnl|fr1|chrUn (42626219-42626423) | |
| 21-220, gnl|galGal2|chr17 (4135029-4134811) | |
| 21-220, gnl|hg17|chr9 (131387625-131387846) | |
| 21-220, gnl|Hg17|chr9 (131387648-131387847) | |
| 21-220, gnl|loxAfr1|scaffold_3518 (16182-15972) | |
| 21-220, gnl|mm7|chr2 (32226826-32227046) | |
| 21-220, gnl|Mm7|chr2 (32226848-32227047) | |
| 21-220, gnl|monDom2|scaffold_51 (7003299-7003516) | |
| 21-220, gnl|panTro1|chr11 (116267110-116267331) | |
| 21-220, gnl|rheMac2|chr15 (7209520-7209299) | |
| 21-220, gnl|rn3|chr3 (11228671-11228892) | |
| 21-220, gnl|tetNig1|chr4 (4469834-4469620) | |
| 21-220, gnl|xenTro1|scaffold_191 (629559-629771) | |
| 384-576, gnl|bosTau2|chr11 (82060136-82060329) | |
| 384-576, gnl|Hg17|chr9 (131389858-131390051) | |
| 384-576, gnl|Mm7|chr2 (32228626-32228818) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-220, gnl|bosTau2|chr11 (82058559-82058758) | |
| 21-220, gnl|canFam2|chr9 (55998525-55998303) | |
| 21-220, gnl|danRer3|chr9 (430940-430722) | |
| 21-220, gnl|dasNov1|scaffold_8624 (43766-43566) | |
| 21-220, gnl|echTel1|scaffold_320314 (79569-79790) | |
| 21-220, gnl|fr1|chrUn (42626219-42626423) | |
| 21-220, gnl|galGal2|chr17 (4135029-4134811) | |
| 21-220, gnl|hg17|chr9 (131387625-131387846) | |
| 21-220, gnl|Hg17|chr9 (131387648-131387847) | |
| 21-220, gnl|loxAfr1|scaffold_3518 (16182-15972) | |
| 21-220, gnl|mm7|chr2 (32226826-32227046) | |
| 21-220, gnl|Mm7|chr2 (32226848-32227047) | |
| 21-220, gnl|monDom2|scaffold_51 (7003299-7003516) | |
| 21-220, gnl|panTro1|chr11 (116267110-116267331) | |
| 21-220, gnl|rheMac2|chr15 (7209520-7209299) | |
| 21-220, gnl|rn3|chr3 (11228671-11228892) | |
| 21-220, gnl|tetNig1|chr4 (4469834-4469620) | |
| 21-220, gnl|xenTro1|scaffold_191 (629559-629771) | |
| 384-576, gnl|bosTau2|chr11 (82060136-82060329) | |
| 384-576, gnl|Hg17|chr9 (131389858-131390051) | |
| 384-576, gnl|Mm7|chr2 (32228626-32228818) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |