Non-Coding RNA Search

Ss1.1-Pig1-114F03.5

Sequence:


               
               CGTGGCGGCGTATGTGGTTATTCCGCCTTAACGGCTAGATGAAGTGCCACTTTTGCCAGT
GGGCTCAAGTGCCAATTGCTTTTTAATGCTGCACACTTTCGTAGTTAGCGTTTTTAGTTT
GATTCCCCCAAATTAATACTTAGATCTCCTTTGTTTCCCGTAATGCTGCTCCTGCGGTAA
AGTGTATCCTAGCACATAAAATGCCTTTTCCGCAAAGGGCATAGAATTAATTAAAGTCAC
TTATTTTTCTTCCAGTTGAGAGTGAGCCAGATTATTGCTTCTACTATGACATGCTGTAGC
ATTTAGGACATAGTAGAAATTTTCCCTTTTCCTGTGAATGGATGGAACACTCTCTTGGAT
GGTATTTTATCACACTTGGTGGTAATTAATAATTTGTGACTAATTCCTACTTTGCTTTTT
ACATATATTTGCTACATAAGCGGTCAAAATCTGAAATCGCTGCTCTTTCGGTCACGGGGT
AGATATCGGTGAGGGCAGGCGTGCCAGGGGTCTGGCTAGAACGGTCTGTTACATAACCAA
CTTGTCAATGTAGGCTCCGTCTGTAAGATAACGCGTGTCAGCTGCTGTGCGCCCGTAGCG
CTTTTTCTAGCACCGCACGTGAGTATGTTGATGCCGAGTTTATTTTTCTTCTCTCATTTT
ACATCCTGAGTTTTGGTGCCAAGTTTTCTTTTTCATGTGAGGTTCTGTTTCTGCTCAAAT
TATTGCCATTGTCACTTGCCCTTGTTTACATCTAAAACTAAAAACACATGGGGTTAAGTG
TCCATTCTGTGACCAAACTCAACGTTTATGTACTTTAAATGATCTAAATCTCTGCAGACC
TTCTCATCCTCATTTTTTCTCAAGTATGAAGTTTTCATGAGTTAAGCGTCATCATTCTTA
ACTTTGCTCAGGTGGCGGTTGAGCTCTTCACGACACCCAGGACCTGAACGCTGCACAGAT
GGGGTTTTTGATTGGAGGGAGGGTGTACACTAGAAAGTTGTTACTGTGTTTTTTCTTCCG
GATGATCACATAAGTACACTATAAAATAGTCCTCACGTGGCTTTTGGAGAAAGATCTGTG
AGAATTTGTTACCTGCTGCTGATTAGGTAAGACGAGCTTTCACGGATGACTCTGTGAGCG
CACGTTTCCAGCCTTGGATTGTCTTTACTTTCAGTATTTTGGCACTGATTGATTTTGGCC
AATTTTCTCTTTTATTTTCTTGGGAAATAAAGAGAGTGTTTCCATATCACCCAGATGTTA
CAGTAAGTTTTTTTTGTGCCTCAGAGTAGAAAGAAAGGGAATTTGTGGGATTTAGCCATG
CAGGATTGCTTCCATCTAAGGCCAGGTTGCTGGTCCATTTTAACACCACACCATACAGGT
GCAGTGTTTAATTACCCTGTAACAAAGTCCCATAGCTTTCTGTAGGAGAGCATTTCTGCA
GAATTCCTTGATTCTGTGGTAACCAGATCTTCAGTGGGCTAATGTATTTTAACTTAATTG
TTTTGATCCCAAGAGGAACTTAACTCTCATCATCGGTTAGCTGGAGAAGCATCTCAGCCT
TATATAAGCAAGTTCAGTGACTCACTCTCAAAAAATTCTTGCCTGATTTAGAAAACAGAC
GCAGTTGGCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGCGGCGTATGTGGTTATTCCGCCTTAACGGCTAGATGAAGTGCCACTTTTGCCAGT
GGGCTCAAGTGCCAATTGCTTTTTAATGCTGCACACTTTCGTAGTTAGCGTTTTTAGTTT
GATTCCCCCAAATTAATACTTAGATCTCCTTTGTTTCCCGTAATGCTGCTCCTGCGGTAA
AGTGTATCCTAGCACATAAAATGCCTTTTCCGCAAAGGGCATAGAATTAATTAAAGTCAC
TTATTTTTCTTCCAGTTGAGAGTGAGCCAGATTATTGCTTCTACTATGACATGCTGTAGC
ATTTAGGACATAGTAGAAATTTTCCCTTTTCCTGTGAATGGATGGAACACTCTCTTGGAT
GGTATTTTATCACACTTGGTGGTAATTAATAATTTGTGACTAATTCCTACTTTGCTTTTT
ACATATATTTGCTACATAAGCGGTCAAAATCTGAAATCGCTGCTCTTTCGGTCACGGGGT
AGATATCGGTGAGGGCAGGCGTGCCAGGGGTCTGGCTAGAACGGTCTGTTACATAACCAA
CTTGTCAATGTAGGCTCCGTCTGTAAGATAACGCGTGTCAGCTGCTGTGCGCCCGTAGCG
CTTTTTCTAGCACCGCACGTGAGTATGTTGATGCCGAGTTTATTTTTCTTCTCTCATTTT
ACATCCTGAGTTTTGGTGCCAAGTTTTCTTTTTCATGTGAGGTTCTGTTTCTGCTCAAAT
TATTGCCATTGTCACTTGCCCTTGTTTACATCTAAAACTAAAAACACATGGGGTTAAGTG
TCCATTCTGTGACCAAACTCAACGTTTATGTACTTTAAATGATCTAAATCTCTGCAGACC
TTCTCATCCTCATTTTTTCTCAAGTATGAAGTTTTCATGAGTTAAGCGTCATCATTCTTA
ACTTTGCTCAGGTGGCGGTTGAGCTCTTCACGACACCCAGGACCTGAACGCTGCACAGAT
GGGGTTTTTGATTGGAGGGAGGGTGTACACTAGAAAGTTGTTACTGTGTTTTTTCTTCCG
GATGATCACATAAGTACACTATAAAATAGTCCTCACGTGGCTTTTGGAGAAAGATCTGTG
AGAATTTGTTACCTGCTGCTGATTAGGTAAGACGAGCTTTCACGGATGACTCTGTGAGCG
CACGTTTCCAGCCTTGGATTGTCTTTACTTTCAGTATTTTGGCACTGATTGATTTTGGCC
AATTTTCTCTTTTATTTTCTTGGGAAATAAAGAGAGTGTTTCCATATCACCCAGATGTTA
CAGTAAGTTTTTTTTGTGCCTCAGAGTAGAAAGAAAGGGAATTTGTGGGATTTAGCCATG
CAGGATTGCTTCCATCTAAGGCCAGGTTGCTGGTCCATTTTAACACCACACCATACAGGT
GCAGTGTTTAATTACCCTGTAACAAAGTCCCATAGCTTTCTGTAGGAGAGCATTTCTGCA
GAATTCCTTGATTCTGTGGTAACCAGATCTTCAGTGGGCTAATGTATTTTAACTTAATTG
TTTTGATCCCAAGAGGAACTTAACTCTCATCATCGGTTAGCTGGAGAAGCATCTCAGCCT
TATATAAGCAAGTTCAGTGACTCACTCTCAAAAAATTCTTGCCTGATTTAGAAAACAGAC
GCAGTTGGCCGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               115-1627, gnl|bosTau2|chr12 (45970543-45969053)
               

               
               115-1627, gnl|Hg17|chr13 (110354329-110352860)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-1627, gnl|bosTau2|chr12 (45970543-45969053)
               

               
               115-1627, gnl|Hg17|chr13 (110354329-110352860)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cty (0.10408)

	115-1627, gnl\|bosTau2\|chr12 (45970543-45969053)
	115-1627, gnl\|Hg17\|chr13 (110354329-110352860)