Ss1.1-Pig1-114L16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGTGGCTGTGATGACCGTGCGGGAGCTCTTTGAATTTGTCACCGATCCATCAATTAC ACATGAGAACGTGGATGCTTATCTCTCAAAGGCCATGGAAATAGCATCTCAAAGGACCAA GGAAGAAAAGTCCAGCCAAGAGCACGTGGATGAAGAGGTGTTTAAGCGAGCCTACATCCC TCGAACCTTGAATGACGTGAAACAGTACGAGAGGGATGTGGACGTGATGATGGCGTTGAA GGAGGAGGACTTGGCCTTGAACGCCCAGCAGGACAGCATCCTGTACCAGACGGTCACGGG GCTGAAGAAGGATCTGTCCGGAGTCCAGAAGGTCCCTGCCCTCCTGGAAGATCAAGTGAA GGAGAAGAGTTGTTCGGACTCAGAAGACACCGGGAGCTCTGCGTGTTCTGACACGGACTC GGAAGAGCGGGGAGGCCAGGCCAACTCCAGGAAGCCTACCACTGACCTTGAAGTTGATAA AAAGGAAAGAAAAAAGATGGTCAAGGAAGCCCAGCGAGAGAAAAGAAAAAACAAAATTCC TAAACATGTGAAAAAAAGAAAGGAGAAGACAGCCAAGACGAAAAAGGGCAAATAGAACTG GAACTGTAGTAAGTACTTTTCCATCCGTGACTTCTCTCGCCAGCGCCCTAAGCCGTGTCT GGAAGATGGGCTTAACCGAATGGTTACCACGGCAGTGCCTGTGAAGACGGATTCGTATTT CTGTGTAATTATGTAAAAAGCTCTGAGTTCTACTGTCTAGATCCAGTCCCTGGCTCTGCG TGGTATGGACAGAGGATTCTTTTAAGCTACTATTTTAATGAAGAACTTGATGCAATTTTG TTTTTATATATTTTTCTCTTGCAGTGTGGTTTTTGAAGCATCATAACTGTTTAAATGTAT TGAGCATTTAAATGTCAGTGTAATGGACATTTGTTTGTACATATGCCAGAGACCTGTCTG CAGTCATGTGATTATAAGGCCATTTGATGATAAGGTTTCTATAAAAGGGAATTTCACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGTGGCTGTGATGACCGTGCGGGAGCTCTTTGAATTTGTCACCGATCCATCAATTAC ACATGAGAACGTGGATGCTTATCTCTCAAAGGCCATGGAAATAGCATCTCAAAGGACCAA GGAAGAAAAGTCCAGCCAAGAGCACGTGGATGAAGAGGTGTTTAAGCGAGCCTACATCCC TCGAACCTTGAATGACGTGAAACAGTACGAGAGGGATGTGGACGTGATGATGGCGTTGAA GGAGGAGGACTTGGCCTTGAACGCCCAGCAGGACAGCATCCTGTACCAGACGGTCACGGG GCTGAAGAAGGATCTGTCCGGAGTCCAGAAGGTCCCTGCCCTCCTGGAAGATCAAGTGAA GGAGAAGAGTTGTTCGGACTCAGAAGACACCGGGAGCTCTGCGTGTTCTGACACGGACTC GGAAGAGCGGGGAGGCCAGGCCAACTCCAGGAAGCCTACCACTGACCTTGAAGTTGATAA AAAGGAAAGAAAAAAGATGGTCAAGGAAGCCCAGCGAGAGAAAAGAAAAAACAAAATTCC TAAACATGTGAAAAAAAGAAAGGAGAAGACAGCCAAGACGAAAAAGGGCAAATAGAACTG GAACTGTAGTAAGTACTTTTCCATCCGTGACTTCTCTCGCCAGCGCCCTAAGCCGTGTCT GGAAGATGGGCTTAACCGAATGGTTACCACGGCAGTGCCTGTGAAGACGGATTCGTATTT CTGTGTAATTATGTAAAAAGCTCTGAGTTCTACTGTCTAGATCCAGTCCCTGGCTCTGCG TGGTATGGACAGAGGATTCTTTTAAGCTACTATTTTAATGAAGAACTTGATGCAATTTTG TTTTTATATATTTTTCTCTTGCAGTGTGGTTTTTGAAGCATCATAACTGTTTAAATGTAT TGAGCATTTAAATGTCAGTGTAATGGACATTTGTTTGTACATATGCCAGAGACCTGTCTG CAGTCATGTGATTATAAGGCCATTTGATGATAAGGTTTCTATAAAAGGGAATTTCACTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 156-275, gnl|bosTau2|chr23 (39525221-39525340) | |
| 156-275, gnl|canFam2|chr35 (10382107-10382180) | |
| 156-275, gnl|danRer3|chr2 (12323991-12324064) | |
| 156-275, gnl|dasNov1|scaffold_34398 (1443-1370) | |
| 156-275, gnl|echTel1|scaffold_297241 (16808-16881) | |
| 156-275, gnl|fr1|chrUn (276060285-276060358) | |
| 156-275, gnl|galGal2|chr2 (64347945-64347872) | |
| 156-275, gnl|hg17|chr6 (7356562-7356635) | |
| 156-275, gnl|Hg17|chr6 (7356562-7356681) | |
| 156-275, gnl|loxAfr1|scaffold_25604 (51487-51414) | |
| 156-275, gnl|mm7|chr13 (37476030-37476103) | |
| 156-275, gnl|Mm7|chr13 (37476030-37476149) | |
| 156-275, gnl|monDom2|scaffold_3 (92049801-92049874) | |
| 156-275, gnl|oryCun1|scaffold_177518 (58727-58654) | |
| 156-275, gnl|panTro1|chr5 (7739254-7739327) | |
| 156-275, gnl|rheMac2|chr4 (7323620-7323693) | |
| 156-275, gnl|rn3|chr17 (33001122-33001049) | |
| 156-275, gnl|tetNig1|chrUn_random (87145342-87145415) | |
| 156-275, gnl|xenTro1|scaffold_64 (1884192-1884265) | |
| 474-908, gnl|bosTau2|chr23 (39528561-39529008) | |
| 474-908, gnl|Hg17|chr6 (7362552-7363002) | |
| 474-908, gnl|Mm7|chr13 (37479639-37480015) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-275, gnl|bosTau2|chr23 (39525221-39525340) | |
| 156-275, gnl|canFam2|chr35 (10382107-10382180) | |
| 156-275, gnl|danRer3|chr2 (12323991-12324064) | |
| 156-275, gnl|dasNov1|scaffold_34398 (1443-1370) | |
| 156-275, gnl|echTel1|scaffold_297241 (16808-16881) | |
| 156-275, gnl|fr1|chrUn (276060285-276060358) | |
| 156-275, gnl|galGal2|chr2 (64347945-64347872) | |
| 156-275, gnl|hg17|chr6 (7356562-7356635) | |
| 156-275, gnl|Hg17|chr6 (7356562-7356681) | |
| 156-275, gnl|loxAfr1|scaffold_25604 (51487-51414) | |
| 156-275, gnl|mm7|chr13 (37476030-37476103) | |
| 156-275, gnl|Mm7|chr13 (37476030-37476149) | |
| 156-275, gnl|monDom2|scaffold_3 (92049801-92049874) | |
| 156-275, gnl|oryCun1|scaffold_177518 (58727-58654) | |
| 156-275, gnl|panTro1|chr5 (7739254-7739327) | |
| 156-275, gnl|rheMac2|chr4 (7323620-7323693) | |
| 156-275, gnl|rn3|chr17 (33001122-33001049) | |
| 156-275, gnl|tetNig1|chrUn_random (87145342-87145415) | |
| 156-275, gnl|xenTro1|scaffold_64 (1884192-1884265) | |
| 474-908, gnl|bosTau2|chr23 (39528561-39529008) | |
| 474-908, gnl|Hg17|chr6 (7362552-7363002) | |
| 474-908, gnl|Mm7|chr13 (37479639-37480015) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (0.29274) | |
| ece (0.229305) | |
| eye (0.170503) | |
| lin (0.145603) | |
| spl (0.143184) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ece (0.229305) | |
| eye (0.170503) | |
| lin (0.145603) | |
| spl (0.143184) |