Non-Coding RNA Search

Ss1.1-Pig1-115A13.5

Sequence:


               
               TGGGACGCAGGGAAGGACATTGGTCCAAAGCCAGGAGCGGCAGTTGTGTTTGGTCCTGGT
CGTTGGCACCATGTCCCGCGTGTCCGTGCCCTGCCATGTGAAAGGCACTGTGGCCCTGCA
GGTGGGGGACGTGCGGACCTCCCAAGGCCGGCCTGGCGTGCTGGTCATCGATGTCACCTT
CCCCAGCGTCGCGCCCTTCGAGTTGCAGGAGATCATGTTTAAGAATTACTACACGGCCTT
TCTGACCATCCGTGTTCGCCAGCACACCTCGACACACACTCCGGCCAAGTGGGTGACCTG
CCTGCGGGACTATTGCCTGATGCCCGACCCACACAGTGAGGAGGGAGCCCAGGAGTATGT
ATCGCTGTTCAAGCACCAGGTCAGCTGGGACTCAGCATGGCCAGGGAAGCTGCGTTTGAT
TCTGCGACAGCCATCGCCGCTGTGGTCATCTTTCACGGTAGAGGAGCTGCAGATCTACCA
GCAGGGACCAAAGAGCCCTTCCATGACCTTCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGACGCAGGGAAGGACATTGGTCCAAAGCCAGGAGCGGCAGTTGTGTTTGGTCCTGGT
CGTTGGCACCATGTCCCGCGTGTCCGTGCCCTGCCATGTGAAAGGCACTGTGGCCCTGCA
GGTGGGGGACGTGCGGACCTCCCAAGGCCGGCCTGGCGTGCTGGTCATCGATGTCACCTT
CCCCAGCGTCGCGCCCTTCGAGTTGCAGGAGATCATGTTTAAGAATTACTACACGGCCTT
TCTGACCATCCGTGTTCGCCAGCACACCTCGACACACACTCCGGCCAAGTGGGTGACCTG
CCTGCGGGACTATTGCCTGATGCCCGACCCACACAGTGAGGAGGGAGCCCAGGAGTATGT
ATCGCTGTTCAAGCACCAGGTCAGCTGGGACTCAGCATGGCCAGGGAAGCTGCGTTTGAT
TCTGCGACAGCCATCGCCGCTGTGGTCATCTTTCACGGTAGAGGAGCTGCAGATCTACCA
GCAGGGACCAAAGAGCCCTTCCATGACCTTCCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24306614|gb|AAN52734.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24306614|gb|AAN52734.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               201-410, gnl|bosTau2|chr22 (37861416-37861207)
               

               
               201-410, gnl|canFam2|chr20 (42811878-42811732)
               

               
               201-410, gnl|Hg17|chr3 (49438867-49438658)
               

               
               201-410, gnl|hg17|chrX (46889357-46889514)
               

               
               201-410, gnl|mm7|chr9 (108026932-108026794)
               

               
               201-410, gnl|Mm7|chr9 (108026765-108026974)
               

               
               201-410, gnl|monDom2|scaffold_50 (8671634-8671476)
               

               
               201-410, gnl|oryCun1|scaffold_187923 (51012-50866)
               

               
               201-410, gnl|panTro1|chrX_random (53380334-53380482)
               

               
               201-410, gnl|rheMac2|chrX (45103321-45103494)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-410, gnl|bosTau2|chr22 (37861416-37861207)
               

               
               201-410, gnl|canFam2|chr20 (42811878-42811732)
               

               
               201-410, gnl|Hg17|chr3 (49438867-49438658)
               

               
               201-410, gnl|hg17|chrX (46889357-46889514)
               

               
               201-410, gnl|mm7|chr9 (108026932-108026794)
               

               
               201-410, gnl|Mm7|chr9 (108026765-108026974)
               

               
               201-410, gnl|monDom2|scaffold_50 (8671634-8671476)
               

               
               201-410, gnl|oryCun1|scaffold_187923 (51012-50866)
               

               
               201-410, gnl|panTro1|chrX_random (53380334-53380482)
               

               
               201-410, gnl|rheMac2|chrX (45103321-45103494)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	201-410, gnl\|bosTau2\|chr22 (37861416-37861207)
	201-410, gnl\|canFam2\|chr20 (42811878-42811732)
	201-410, gnl\|Hg17\|chr3 (49438867-49438658)
	201-410, gnl\|hg17\|chrX (46889357-46889514)
	201-410, gnl\|mm7\|chr9 (108026932-108026794)
	201-410, gnl\|Mm7\|chr9 (108026765-108026974)
	201-410, gnl\|monDom2\|scaffold_50 (8671634-8671476)
	201-410, gnl\|oryCun1\|scaffold_187923 (51012-50866)
	201-410, gnl\|panTro1\|chrX_random (53380334-53380482)
	201-410, gnl\|rheMac2\|chrX (45103321-45103494)