Non-Coding RNA Search

Ss1.1-Pig1-115B05.5

Sequence:


               
               GCGTCGCCAGGGAGTGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAG
ACCTGCCCGTCCTGCGGAATCACCTTTGCTCCCAAGTGGGAAGCGGGCGCAGAAGGCGGA
GCGGTGCAGAACGGCTGTCAGGAGGAGCCCAAGAACGGCACCAAGGCGTCTGGAGGAGCC
GGTTCCAAAGCCCAAAACGGACTGCTGAGCCCCCCACCTGAGGAGAAGCTCAGCAACAGT
CACACCTCGCTGTGCGAGATCTTACAGGAGAAAGGGCGCTGGGCAGGTGTGAGCTTGGAC
CAGTCGGCTCTCCTTCCGCTGCGGTTCAAGAACATCCGCGAGAAAACAGACGCCCACTTT
GTGGATGTCATCAAGGAAGACAGCCTGATGAAAGATTATTTTTTTAAGCCACCCATTAAT
CAGTTCAGCCTGAACTTCCTGGATCAGGAGCTCGAGCGAGCCTACAGGACCAGCTATCAA
GAGGAGGTCGTAAAGAGCTCCCCAGTGAAGACCTTCGCCAGTGCCACCTTCAGCTCCCTC
CTGGATGTGTTTCTGTCCACGACAGTGTTTCTGATTCTCTCCATCACCTGCTTCCTGAAG
TATGGGGCCAATGCCACGCCACCCCAGCCGGCAGCCCTGGCCGTCTTTGCGGCAGCGCTG
CTGCTGGAGGTGCTGTCCCTCGGGGTCTCCGTCAGGATGGCGTTCTTCCTGGAGGACGTG
ATGGCTTGTACCAAGCGCCTGCTGGAGTGGATCGCTGGCTGGCTCCCGCGCCACTGCATC
GGGGCCATCCTGGTGTCCCTCCCCGCCCTCGCCGTCTACTCACACGTCACCTCCAAATTT
GAGACGGACATACACTCCACCGTGTTCACGGGCTCGGCTGTCCTGATCGCCGTGGTGCAC
TACTGCAACTTCTGCCAGCTCAGCTCCTGGATGAGGTCCTCCCTGGCCACGGTCGTTGGG
GCCGGGCCCCGGCTCCTGCTCTACGCCTCCCTCTGCCCCGACAGTTCCATAGTTATTTCA
CACCTTGATGCAGTACAGAATTTCAGGTAAGCTTTTAACATTGTTCCTGTATCTGGATAA
GTGAGAGTGACTCTAGGACTGCCCTTCATCTCTGCGCTTCCTGAACGTGGTTGTGTCTGT
GCATGAAAAGATCATGTGGGTTCTTACGCGTAAGCGGGAAATGGCTATTTGCTGACGTAT
GAGGTCCTCCTTGTCCTGTCCTCCTGGAAATGATCGTTAGCACGTCTGCCAGTTTCTCCT
GCTCCCTAAAGGTGGAGCATCCCTGGAAACCTTTCCCAAGCCAGAAAGCGGAGAAGCAGT
TACCTTAGGACGCCGCTCACTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCGCCAGGGAGTGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAG
ACCTGCCCGTCCTGCGGAATCACCTTTGCTCCCAAGTGGGAAGCGGGCGCAGAAGGCGGA
GCGGTGCAGAACGGCTGTCAGGAGGAGCCCAAGAACGGCACCAAGGCGTCTGGAGGAGCC
GGTTCCAAAGCCCAAAACGGACTGCTGAGCCCCCCACCTGAGGAGAAGCTCAGCAACAGT
CACACCTCGCTGTGCGAGATCTTACAGGAGAAAGGGCGCTGGGCAGGTGTGAGCTTGGAC
CAGTCGGCTCTCCTTCCGCTGCGGTTCAAGAACATCCGCGAGAAAACAGACGCCCACTTT
GTGGATGTCATCAAGGAAGACAGCCTGATGAAAGATTATTTTTTTAAGCCACCCATTAAT
CAGTTCAGCCTGAACTTCCTGGATCAGGAGCTCGAGCGAGCCTACAGGACCAGCTATCAA
GAGGAGGTCGTAAAGAGCTCCCCAGTGAAGACCTTCGCCAGTGCCACCTTCAGCTCCCTC
CTGGATGTGTTTCTGTCCACGACAGTGTTTCTGATTCTCTCCATCACCTGCTTCCTGAAG
TATGGGGCCAATGCCACGCCACCCCAGCCGGCAGCCCTGGCCGTCTTTGCGGCAGCGCTG
CTGCTGGAGGTGCTGTCCCTCGGGGTCTCCGTCAGGATGGCGTTCTTCCTGGAGGACGTG
ATGGCTTGTACCAAGCGCCTGCTGGAGTGGATCGCTGGCTGGCTCCCGCGCCACTGCATC
GGGGCCATCCTGGTGTCCCTCCCCGCCCTCGCCGTCTACTCACACGTCACCTCCAAATTT
GAGACGGACATACACTCCACCGTGTTCACGGGCTCGGCTGTCCTGATCGCCGTGGTGCAC
TACTGCAACTTCTGCCAGCTCAGCTCCTGGATGAGGTCCTCCCTGGCCACGGTCGTTGGG
GCCGGGCCCCGGCTCCTGCTCTACGCCTCCCTCTGCCCCGACAGTTCCATAGTTATTTCA
CACCTTGATGCAGTACAGAATTTCAGGTAAGCTTTTAACATTGTTCCTGTATCTGGATAA
GTGAGAGTGACTCTAGGACTGCCCTTCATCTCTGCGCTTCCTGAACGTGGTTGTGTCTGT
GCATGAAAAGATCATGTGGGTTCTTACGCGTAAGCGGGAAATGGCTATTTGCTGACGTAT
GAGGTCCTCCTTGTCCTGTCCTCCTGGAAATGATCGTTAGCACGTCTGCCAGTTTCTCCT
GCTCCCTAAAGGTGGAGCATCCCTGGAAACCTTTCCCAAGCCAGAAAGCGGAGAAGCAGT
TACCTTAGGACGCCGCTCACTGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               204-363, - strand, RNAz p=0.54026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-363, - strand, RNAz p=0.54026

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               164-383, gnl|bosTau2|chr25 (4060450-4060231)
               

               
               164-383, gnl|Hg17|chr16 (3982367-3982148)
               

               
               164-383, gnl|Mm7|chr16 (3983309-3983090)
               


               
               482-696, gnl|bosTau2|chr25 (4053108-4052894)
               

               
               482-696, gnl|canFam2|chr6 (40358681-40358418)
               

               
               482-696, gnl|danRer3|chrNA (36855366-36855615)
               

               
               482-696, gnl|echTel1|scaffold_241173 (696-442)
               

               
               482-696, gnl|fr1|chrUn (56351836-56352025)
               

               
               482-696, gnl|galGal2|chr14 (14449899-14450140)
               

               
               482-696, gnl|hg17|chr16 (3973216-3973468)
               

               
               482-696, gnl|Hg17|chr16 (3973447-3973233)
               

               
               482-696, gnl|loxAfr1|scaffold_19166 (17446-17702)
               

               
               482-696, gnl|mm7|chr16 (3975924-3976175)
               

               
               482-696, gnl|Mm7|chr16 (3976155-3975941)
               

               
               482-696, gnl|monDom2|scaffold_49 (4905554-4905326)
               

               
               482-696, gnl|panTro1|chr18 (3844421-3844673)
               

               
               482-696, gnl|rheMac2|chr20 (4116015-4116267)
               

               
               482-696, gnl|rn3|chr10 (11503327-11503076)
               

               
               482-696, gnl|tetNig1|chr18 (1684598-1684837)
               

               
               482-696, gnl|xenTro1|scaffold_12 (2645218-2644993)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-383, gnl|bosTau2|chr25 (4060450-4060231)
               

               
               164-383, gnl|Hg17|chr16 (3982367-3982148)
               

               
               164-383, gnl|Mm7|chr16 (3983309-3983090)
               


               
               482-696, gnl|bosTau2|chr25 (4053108-4052894)
               

               
               482-696, gnl|canFam2|chr6 (40358681-40358418)
               

               
               482-696, gnl|danRer3|chrNA (36855366-36855615)
               

               
               482-696, gnl|echTel1|scaffold_241173 (696-442)
               

               
               482-696, gnl|fr1|chrUn (56351836-56352025)
               

               
               482-696, gnl|galGal2|chr14 (14449899-14450140)
               

               
               482-696, gnl|hg17|chr16 (3973216-3973468)
               

               
               482-696, gnl|Hg17|chr16 (3973447-3973233)
               

               
               482-696, gnl|loxAfr1|scaffold_19166 (17446-17702)
               

               
               482-696, gnl|mm7|chr16 (3975924-3976175)
               

               
               482-696, gnl|Mm7|chr16 (3976155-3975941)
               

               
               482-696, gnl|monDom2|scaffold_49 (4905554-4905326)
               

               
               482-696, gnl|panTro1|chr18 (3844421-3844673)
               

               
               482-696, gnl|rheMac2|chr20 (4116015-4116267)
               

               
               482-696, gnl|rn3|chr10 (11503327-11503076)
               

               
               482-696, gnl|tetNig1|chr18 (1684598-1684837)
               

               
               482-696, gnl|xenTro1|scaffold_12 (2645218-2644993)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	164-383, gnl\|bosTau2\|chr25 (4060450-4060231)
	164-383, gnl\|Hg17\|chr16 (3982367-3982148)
	164-383, gnl\|Mm7\|chr16 (3983309-3983090)

	482-696, gnl\|bosTau2\|chr25 (4053108-4052894)
	482-696, gnl\|canFam2\|chr6 (40358681-40358418)
	482-696, gnl\|danRer3\|chrNA (36855366-36855615)
	482-696, gnl\|echTel1\|scaffold_241173 (696-442)
	482-696, gnl\|fr1\|chrUn (56351836-56352025)
	482-696, gnl\|galGal2\|chr14 (14449899-14450140)
	482-696, gnl\|hg17\|chr16 (3973216-3973468)
	482-696, gnl\|Hg17\|chr16 (3973447-3973233)
	482-696, gnl\|loxAfr1\|scaffold_19166 (17446-17702)
	482-696, gnl\|mm7\|chr16 (3975924-3976175)
	482-696, gnl\|Mm7\|chr16 (3976155-3975941)
	482-696, gnl\|monDom2\|scaffold_49 (4905554-4905326)
	482-696, gnl\|panTro1\|chr18 (3844421-3844673)
	482-696, gnl\|rheMac2\|chr20 (4116015-4116267)
	482-696, gnl\|rn3\|chr10 (11503327-11503076)
	482-696, gnl\|tetNig1\|chr18 (1684598-1684837)
	482-696, gnl\|xenTro1\|scaffold_12 (2645218-2644993)