Non-Coding RNA Search

Ss1.1-Pig1-115B16.5

Sequence:


               
               GAGAGGTGATTTCCCGGCTGCGGAACTGCATCGTCTCGCTGGTCACCCAGAGGGTGATGC
TGTATGATACCAGCATCCTGTACTGCTACGAGGCATCCCTTCCACATCAGATCAAAGACA
TCTTAAAGCCAGAAGTAATGGAGGAAATTGTGATGGAGACACGCCAGAGGCTTCTGGAAC
AGGAGGGGTAAGGAGAAGCAGGTGGAGGACGGGACTCAGTGTGCCCGGCCGGAGCAGTCC
CTGAAAGCGACGGCCCCGATTCAGGGCTGGGGCACTCGTCACTCGACCCACCCTGGGCTG
CCTCCCGTGGAAGACCTGCTTTCTCCTGTTTTAAGGCAGAGCCTGGGACGGTGAACAGCA
GCTGGCCCCTTGGGTTGCCCACAGAGTCCCAGTACTAGGGGTGGTTTCAGGGCTTTAAAA
GCACGAAGTGTTCCAGCCGAGCGGACTTGTTCCTGGAACCATACAGGACATCTTTTGTCT
CCTGCGCACCATCACTTCACAAGGCACGCGGCCCCCTTGAAATTGCCCTGTAAAAATGTG
GCCTCCCTGGCCCCCAGATTATCTCTTCTGGCCCCTGTTCCCCCACCTCCTGCAGCTCAA
GTACAACACTGATGAATATAGTCGGTAAAGGAGTCAAAGGGAAGAATAAAGTAGCCAAGC
AGGCTTTTGCTCGGTTGGAATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGTGATTTCCCGGCTGCGGAACTGCATCGTCTCGCTGGTCACCCAGAGGGTGATGC
TGTATGATACCAGCATCCTGTACTGCTACGAGGCATCCCTTCCACATCAGATCAAAGACA
TCTTAAAGCCAGAAGTAATGGAGGAAATTGTGATGGAGACACGCCAGAGGCTTCTGGAAC
AGGAGGGGTAAGGAGAAGCAGGTGGAGGACGGGACTCAGTGTGCCCGGCCGGAGCAGTCC
CTGAAAGCGACGGCCCCGATTCAGGGCTGGGGCACTCGTCACTCGACCCACCCTGGGCTG
CCTCCCGTGGAAGACCTGCTTTCTCCTGTTTTAAGGCAGAGCCTGGGACGGTGAACAGCA
GCTGGCCCCTTGGGTTGCCCACAGAGTCCCAGTACTAGGGGTGGTTTCAGGGCTTTAAAA
GCACGAAGTGTTCCAGCCGAGCGGACTTGTTCCTGGAACCATACAGGACATCTTTTGTCT
CCTGCGCACCATCACTTCACAAGGCACGCGGCCCCCTTGAAATTGCCCTGTAAAAATGTG
GCCTCCCTGGCCCCCAGATTATCTCTTCTGGCCCCTGTTCCCCCACCTCCTGCAGCTCAA
GTACAACACTGATGAATATAGTCGGTAAAGGAGTCAAAGGGAAGAATAAAGTAGCCAAGC
AGGCTTTTGCTCGGTTGGAATCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               427-555, - strand, RNAz p=0.847864
               

               
               450-557, - strand, RNAz p=0.913159

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-555, - strand, RNAz p=0.847864
               

               
               450-557, - strand, RNAz p=0.913159

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               96-243, gnl|bosTau2|chr11 (84501746-84501893)
               

               
               96-243, gnl|Hg17|chr9 (130608623-130608750)
               

               
               96-243, gnl|Mm7|chr2 (31687786-31687928)
               


               
               267-684, gnl|bosTau2|chr11 (84501942-84502389)
               

               
               267-684, gnl|canFam2|chr9 (56612572-56612201)
               

               
               267-684, gnl|dasNov1|scaffold_161336 (1197-879)
               

               
               267-684, gnl|echTel1|scaffold_265084 (2678-3001)
               

               
               267-684, gnl|hg17|chr9 (130608774-130609092)
               

               
               267-684, gnl|Hg17|chr9 (130608801-130609514)
               

               
               267-684, gnl|loxAfr1|scaffold_14951 (35645-35963)
               

               
               267-684, gnl|mm7|chr2 (31687950-31688213)
               

               
               267-684, gnl|monDom2|scaffold_51 (5977053-5977484)
               

               
               267-684, gnl|oryCun1|scaffold_138502 (7861-7563)
               

               
               267-684, gnl|panTro1|chr11 (115487860-115488178)
               

               
               267-684, gnl|rheMac2|chr15 (8119366-8119048)
               

               
               267-684, gnl|rn3|chr3 (10692913-10693201)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-243, gnl|bosTau2|chr11 (84501746-84501893)
               

               
               96-243, gnl|Hg17|chr9 (130608623-130608750)
               

               
               96-243, gnl|Mm7|chr2 (31687786-31687928)
               


               
               267-684, gnl|bosTau2|chr11 (84501942-84502389)
               

               
               267-684, gnl|canFam2|chr9 (56612572-56612201)
               

               
               267-684, gnl|dasNov1|scaffold_161336 (1197-879)
               

               
               267-684, gnl|echTel1|scaffold_265084 (2678-3001)
               

               
               267-684, gnl|hg17|chr9 (130608774-130609092)
               

               
               267-684, gnl|Hg17|chr9 (130608801-130609514)
               

               
               267-684, gnl|loxAfr1|scaffold_14951 (35645-35963)
               

               
               267-684, gnl|mm7|chr2 (31687950-31688213)
               

               
               267-684, gnl|monDom2|scaffold_51 (5977053-5977484)
               

               
               267-684, gnl|oryCun1|scaffold_138502 (7861-7563)
               

               
               267-684, gnl|panTro1|chr11 (115487860-115488178)
               

               
               267-684, gnl|rheMac2|chr15 (8119366-8119048)
               

               
               267-684, gnl|rn3|chr3 (10692913-10693201)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	427-555, - strand, RNAz p=0.847864
	450-557, - strand, RNAz p=0.913159

	96-243, gnl\|bosTau2\|chr11 (84501746-84501893)
	96-243, gnl\|Hg17\|chr9 (130608623-130608750)
	96-243, gnl\|Mm7\|chr2 (31687786-31687928)

	267-684, gnl\|bosTau2\|chr11 (84501942-84502389)
	267-684, gnl\|canFam2\|chr9 (56612572-56612201)
	267-684, gnl\|dasNov1\|scaffold_161336 (1197-879)
	267-684, gnl\|echTel1\|scaffold_265084 (2678-3001)
	267-684, gnl\|hg17\|chr9 (130608774-130609092)
	267-684, gnl\|Hg17\|chr9 (130608801-130609514)
	267-684, gnl\|loxAfr1\|scaffold_14951 (35645-35963)
	267-684, gnl\|mm7\|chr2 (31687950-31688213)
	267-684, gnl\|monDom2\|scaffold_51 (5977053-5977484)
	267-684, gnl\|oryCun1\|scaffold_138502 (7861-7563)
	267-684, gnl\|panTro1\|chr11 (115487860-115488178)
	267-684, gnl\|rheMac2\|chr15 (8119366-8119048)
	267-684, gnl\|rn3\|chr3 (10692913-10693201)

	fce (0.271592)
	col (0.195008)
	csp (0.161186)
	pgl (0.118483)
	jca (0.11396)
	ldo (0.0970026)