Non-Coding RNA Search

Ss1.1-Pig1-115O03.5

Sequence:


               
               CCTGCGCGGCCCCCTCGGCCGAGGGTCTGGTCAGAGAGGAGGGTCGCCTGAGGCAGCCTC
AGTCCTTCTTGCCTCCTGGGGCTGGGCTTCTTGTGAGGAGCTTCCCGGAGCTGGAGGGGG
TCAACGTGGACACCGTGGGGGACTCCAGTTTCACTCTGTCCAGGAGGGTCTTCTTGAGGG
CAGCTGCGGGGACCTTTTCTTGGTCCGCCATGGACTGCAGCTCTCTTGTGCGGATGCAGG
AGGCCTCCACTGCGTTGATGAGCAGGGAGCGGAAGCCGCCGCTCTCTAGAAAGTGCAGAG
CATGGATGGTGGCCCCCCCGGGGGAGCAGACATTGTCCTTGAGCTGGCCCGGATGCTGCT
CAGAGTCCAGTAGCATCTTGGCAGCACCCAGCAAGGCCTGGGCCCCCAGTCGGACGGCCA
GGCGCCGCGGCAGGCCCATCTTCACCCCACCATCGGCCAGGGCGTCCAGGGCCATGAACG
CATAGGCAGGCCCACTGCCACTGAGGCCTGTGACGGCATCAATCAGGTCCTCCTCCACCT
CGGTGCAGAAGCCCACGCTGCTCATGAGCTGCTCCAGGAGCTGCCCGTCCTCCACCAGGG
CATGCGTGCCCGTGGCGTACACCGTGGCGCCCTCCCGCACCACCACGGGCGTGTTGGTCA
TACAGCGGATGACCTTGGGCGCCGGCTGGAACGCCTGCAGTTTCTTCTCCACAGAGCTGA
TGGTGACACCGGCCGCACAGGAGACCACAATGTGCCTGGCCTGGACATCGGCCCCAATCT
CGTCCAGGATGAAGGGGATGATGTGTGGCTTCACGGCCAGGAACAGGACATCGCTGTGCC
TCACTGTCTCCTTGTTGCTCCGGGTCAGGTTCACCCCCATCTTCCTGAGCGCGGCCACCG
TGGGCAGGTCCATTTCCGGGGAGCTGGCTATTATCTTGTGAGCCGACAGGATGCCTGCAG
CCGTGAAGCCCCGCGCCAGGGCGCAGGCCAGCTGGCCGGCGCCGATGAAGCCCACGCTCA
TGGTTCGCTCCGCGTCTGCCGAGCAGCCTGGGGAGTCCGCGCAGCGAGGAAAGGCGAAAA
GCGGATAACTGAGCGGGCGACGCGCCCCGGAGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGCGGCCCCCTCGGCCGAGGGTCTGGTCAGAGAGGAGGGTCGCCTGAGGCAGCCTC
AGTCCTTCTTGCCTCCTGGGGCTGGGCTTCTTGTGAGGAGCTTCCCGGAGCTGGAGGGGG
TCAACGTGGACACCGTGGGGGACTCCAGTTTCACTCTGTCCAGGAGGGTCTTCTTGAGGG
CAGCTGCGGGGACCTTTTCTTGGTCCGCCATGGACTGCAGCTCTCTTGTGCGGATGCAGG
AGGCCTCCACTGCGTTGATGAGCAGGGAGCGGAAGCCGCCGCTCTCTAGAAAGTGCAGAG
CATGGATGGTGGCCCCCCCGGGGGAGCAGACATTGTCCTTGAGCTGGCCCGGATGCTGCT
CAGAGTCCAGTAGCATCTTGGCAGCACCCAGCAAGGCCTGGGCCCCCAGTCGGACGGCCA
GGCGCCGCGGCAGGCCCATCTTCACCCCACCATCGGCCAGGGCGTCCAGGGCCATGAACG
CATAGGCAGGCCCACTGCCACTGAGGCCTGTGACGGCATCAATCAGGTCCTCCTCCACCT
CGGTGCAGAAGCCCACGCTGCTCATGAGCTGCTCCAGGAGCTGCCCGTCCTCCACCAGGG
CATGCGTGCCCGTGGCGTACACCGTGGCGCCCTCCCGCACCACCACGGGCGTGTTGGTCA
TACAGCGGATGACCTTGGGCGCCGGCTGGAACGCCTGCAGTTTCTTCTCCACAGAGCTGA
TGGTGACACCGGCCGCACAGGAGACCACAATGTGCCTGGCCTGGACATCGGCCCCAATCT
CGTCCAGGATGAAGGGGATGATGTGTGGCTTCACGGCCAGGAACAGGACATCGCTGTGCC
TCACTGTCTCCTTGTTGCTCCGGGTCAGGTTCACCCCCATCTTCCTGAGCGCGGCCACCG
TGGGCAGGTCCATTTCCGGGGAGCTGGCTATTATCTTGTGAGCCGACAGGATGCCTGCAG
CCGTGAAGCCCCGCGCCAGGGCGCAGGCCAGCTGGCCGGCGCCGATGAAGCCCACGCTCA
TGGTTCGCTCCGCGTCTGCCGAGCAGCCTGGGGAGTCCGCGCAGCGAGGAAAGGCGAAAA
GCGGATAACTGAGCGGGCGACGCGCCCCGGAGCCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56203954|emb|CAI21801.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56203954|emb|CAI21801.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               227-345, - strand, RNAz p=0.740092

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-345, - strand, RNAz p=0.740092

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               57-226, gnl|bosTau2|chr19 (45451307-45451476)
               

               
               57-226, gnl|Hg17|chr17 (77484379-77484545)
               

               
               57-226, gnl|Mm7|chr11 (120749232-120749395)
               


               
               227-389, gnl|bosTau2|chr19 (45452308-45452470)
               

               
               227-389, gnl|Hg17|chr17 (77485495-77485657)
               

               
               227-389, gnl|Mm7|chr11 (120750189-120750351)
               


               
               481-705, gnl|bosTau2|chr19 (45453024-45453248)
               

               
               481-705, gnl|Hg17|chr17 (77486092-77486316)
               

               
               481-705, gnl|Mm7|chr11 (120750694-120750918)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-226, gnl|bosTau2|chr19 (45451307-45451476)
               

               
               57-226, gnl|Hg17|chr17 (77484379-77484545)
               

               
               57-226, gnl|Mm7|chr11 (120749232-120749395)
               


               
               227-389, gnl|bosTau2|chr19 (45452308-45452470)
               

               
               227-389, gnl|Hg17|chr17 (77485495-77485657)
               

               
               227-389, gnl|Mm7|chr11 (120750189-120750351)
               


               
               481-705, gnl|bosTau2|chr19 (45453024-45453248)
               

               
               481-705, gnl|Hg17|chr17 (77486092-77486316)
               

               
               481-705, gnl|Mm7|chr11 (120750694-120750918)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	57-226, gnl\|bosTau2\|chr19 (45451307-45451476)
	57-226, gnl\|Hg17\|chr17 (77484379-77484545)
	57-226, gnl\|Mm7\|chr11 (120749232-120749395)

	227-389, gnl\|bosTau2\|chr19 (45452308-45452470)
	227-389, gnl\|Hg17\|chr17 (77485495-77485657)
	227-389, gnl\|Mm7\|chr11 (120750189-120750351)

	481-705, gnl\|bosTau2\|chr19 (45453024-45453248)
	481-705, gnl\|Hg17\|chr17 (77486092-77486316)
	481-705, gnl\|Mm7\|chr11 (120750694-120750918)

	cty (0.20816)
	ill (0.175593)
	nje (0.16592)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)