Ss1.1-Pig1-115P04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCGTTGGCGGTGGCTGTGGCGAGGGTTTGGGAGCGCAGTCAAGGCTTGGGCCAGGCT GGCCTCCTGCTTCTGCGGCGGCTTGGGGCTCGGGGTCTGGCTAGATCTGGTCAGCCTTCC TTGGCGGTGGCTGTGGCGAGGGTTTGGGAGCGCAGTCAAGGCTTGGGCCAGGCTGGCCTC CTGCTTCTGCGGCGGCTTGGGGCTCGGGGTCTGGCTAGATCTCACCCCCAGAGACAGCAG CAGCAGCAGCACTTCTCCTCCCTGGATGACAAGCCCCAGTTCCCAGGGGCCTCAGCGGAG TTTATAGACAAGCTAGAATTCATCCAGCCGAATGTCATCTCTGGGATTCCCATCTATCGT GTCATGGACCGGCAGGGCCAGATCATCAACCCCAGCGAGGATCCCCACTTGCCCCAGGAG AAGGTGCTCAAGTTCTACAAGAGCATGACACTGCTCAACACCATGGACCGCATCCTCTAC GAGTCCCAGAGGCAGGGCCGGATATCCTTCTACATGACCAACTATGGCGAGGAGGGCACG CACGTGGGCAGTGCAGCAGCCCTGGACAACACCGACCTGGTGTTTGGCCAGTACCGGGAG GCAGGTGTGCTCATGTACCGGGACTACCCCCTGGAGCTGTTCATGGCCCAGTGCTACAGC AACGTGAGCGACCTGGGCAAGGGCCGCCAGATGCCCGTCCACTACGGCTGCAGGGAGCGC CACTTCGTCACTATCTCCTCTCCACTGGCCACGCAGATCCCTCAGGCGGTGGGGGCGGCC TACGCAGCCAAGCGGGCCAATGCCAACAGGGTTGTCATCTGTTACTTCGGAGAGGGGGCG GCCAGTGAGGGGGACGCCCATGCCGGCTTCAACTTCGCCGCCACCCTGGAGTGCCCCATC ATCTTCTTTTGCCGGAACAATGGCTATGCCATCTCCACGCCCACCTCCGAGCAGTACCGC GGGGATGGCATCGCGGCTCGAGGCCCCGGGTACGGCATCCTGTCCATCCGCGTGGACGGC AATGACGTGTTCGCCGTGTACAACGCCACCAAGGAGGCCCGGCGGCGGGCTGTGGCAGAG AACCAGCCCTTCCTCATTGAGGCCATGACCTACAGGATCGGGCACCACAGCACCAGTGAT GACAGCTCAGCGTACCGCTCGGTGGACGAGGTCAGTTACTGGGACAAGCAGGACCACCCC ATCTCCCGGCTGAGGCACTACCTGCAGAGTCGGGGCTGGTGGGACGACGAGCAGGAGAAG GCCTGGAGGAAGCAGTCCCGCAAGAAGGTGATGGAGGCCTTTCAGCAGGCTGAGCGGAAG CTGAAGCCCAATCCCAACCTGCTCTTCTCGGACGTGTATCAGGAGATGCCTGCGCAGCTC CGCAAGCAGCAGGAGTCTCTGGCCCGTCACCTCCAGACGTATGGTGAACACTACCCCCTG GACCACTTTGAGAAGTGAGGCCACTGGCCCCACCCCTGCCCACCTCAGTGGCCCCAAGAG AGAGCTCCACCCCAAAGGGTGGAGCAGCTGGCAGGATGCTGCCCTCTGCCCCAGGCAGCT CCCTCCGAAGTACTCAGGGGCCAGGGCAGTTCTGGGGGCTCCTGCTCACTATCCCTGCTC CTCCAGACTGTTACAGTGGTGGGGCTTCTGTCGGCCCCTCTTTGCCTTTTGTTGCAAGGC CTTGGCGAGGGCTCCTGGACTGGAAGCCCTCTGGGCTGCGGGTGGACATGGCAGTTCAGC CTGTGGAACTTGGGGTGAGAGGTGGTCAGTGCATGAATAAACTCTCTGCATTTGGTCCCT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCGTTGGCGGTGGCTGTGGCGAGGGTTTGGGAGCGCAGTCAAGGCTTGGGCCAGGCT GGCCTCCTGCTTCTGCGGCGGCTTGGGGCTCGGGGTCTGGCTAGATCTGGTCAGCCTTCC TTGGCGGTGGCTGTGGCGAGGGTTTGGGAGCGCAGTCAAGGCTTGGGCCAGGCTGGCCTC CTGCTTCTGCGGCGGCTTGGGGCTCGGGGTCTGGCTAGATCTCACCCCCAGAGACAGCAG CAGCAGCAGCACTTCTCCTCCCTGGATGACAAGCCCCAGTTCCCAGGGGCCTCAGCGGAG TTTATAGACAAGCTAGAATTCATCCAGCCGAATGTCATCTCTGGGATTCCCATCTATCGT GTCATGGACCGGCAGGGCCAGATCATCAACCCCAGCGAGGATCCCCACTTGCCCCAGGAG AAGGTGCTCAAGTTCTACAAGAGCATGACACTGCTCAACACCATGGACCGCATCCTCTAC GAGTCCCAGAGGCAGGGCCGGATATCCTTCTACATGACCAACTATGGCGAGGAGGGCACG CACGTGGGCAGTGCAGCAGCCCTGGACAACACCGACCTGGTGTTTGGCCAGTACCGGGAG GCAGGTGTGCTCATGTACCGGGACTACCCCCTGGAGCTGTTCATGGCCCAGTGCTACAGC AACGTGAGCGACCTGGGCAAGGGCCGCCAGATGCCCGTCCACTACGGCTGCAGGGAGCGC CACTTCGTCACTATCTCCTCTCCACTGGCCACGCAGATCCCTCAGGCGGTGGGGGCGGCC TACGCAGCCAAGCGGGCCAATGCCAACAGGGTTGTCATCTGTTACTTCGGAGAGGGGGCG GCCAGTGAGGGGGACGCCCATGCCGGCTTCAACTTCGCCGCCACCCTGGAGTGCCCCATC ATCTTCTTTTGCCGGAACAATGGCTATGCCATCTCCACGCCCACCTCCGAGCAGTACCGC GGGGATGGCATCGCGGCTCGAGGCCCCGGGTACGGCATCCTGTCCATCCGCGTGGACGGC AATGACGTGTTCGCCGTGTACAACGCCACCAAGGAGGCCCGGCGGCGGGCTGTGGCAGAG AACCAGCCCTTCCTCATTGAGGCCATGACCTACAGGATCGGGCACCACAGCACCAGTGAT GACAGCTCAGCGTACCGCTCGGTGGACGAGGTCAGTTACTGGGACAAGCAGGACCACCCC ATCTCCCGGCTGAGGCACTACCTGCAGAGTCGGGGCTGGTGGGACGACGAGCAGGAGAAG GCCTGGAGGAAGCAGTCCCGCAAGAAGGTGATGGAGGCCTTTCAGCAGGCTGAGCGGAAG CTGAAGCCCAATCCCAACCTGCTCTTCTCGGACGTGTATCAGGAGATGCCTGCGCAGCTC CGCAAGCAGCAGGAGTCTCTGGCCCGTCACCTCCAGACGTATGGTGAACACTACCCCCTG GACCACTTTGAGAAGTGAGGCCACTGGCCCCACCCCTGCCCACCTCAGTGGCCCCAAGAG AGAGCTCCACCCCAAAGGGTGGAGCAGCTGGCAGGATGCTGCCCTCTGCCCCAGGCAGCT CCCTCCGAAGTACTCAGGGGCCAGGGCAGTTCTGGGGGCTCCTGCTCACTATCCCTGCTC CTCCAGACTGTTACAGTGGTGGGGCTTCTGTCGGCCCCTCTTTGCCTTTTGTTGCAAGGC CTTGGCGAGGGCTCCTGGACTGGAAGCCCTCTGGGCTGCGGGTGGACATGGCAGTTCAGC CTGTGGAACTTGGGGTGAGAGGTGGTCAGTGCATGAATAAACTCTCTGCATTTGGTCCCT AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr18 (45855049-45855157) | |
| 1-109, gnl|canFam2|chr1 (115507818-115507537) | |
| 1-109, gnl|dasNov1|scaffold_68677 (1314-1640) | |
| 1-109, gnl|echTel1|scaffold_113038 (97-420) | |
| 1-109, gnl|hg17|chr19 (46595544-46595861) | |
| 1-109, gnl|Hg17|chr19 (46595573-46595681) | |
| 1-109, gnl|mm7|chr7 (22432469-22432178) | |
| 1-109, gnl|Mm7|chr7 (22432439-22432337) | |
| 1-109, gnl|monDom2|scaffold_149 (896000-896267) | |
| 1-109, gnl|rheMac2|chr19 (47792150-47792462) | |
| 1-109, gnl|rn3|chr1 (80944806-80944503) | |
| 223-408, gnl|bosTau2|chr18 (45864505-45864690) | |
| 223-408, gnl|Hg17|chr19 (46608382-46608561) | |
| 223-408, gnl|Mm7|chr7 (22415672-22415490) | |
| 493-606, gnl|bosTau2|chr18 (45868310-45868423) | |
| 493-606, gnl|canFam2|chr1 (115494984-115494866) | |
| 493-606, gnl|danRer3|chr18 (37173399-37173520) | |
| 493-606, gnl|echTel1|scaffold_277434 (811-692) | |
| 493-606, gnl|fr1|chrUn (65919956-65920074) | |
| 493-606, gnl|hg17|chr19 (46611789-46611910) | |
| 493-606, gnl|Hg17|chr19 (46611791-46611904) | |
| 493-606, gnl|mm7|chr7 (22412123-22412002) | |
| 493-606, gnl|Mm7|chr7 (22412119-22412006) | |
| 493-606, gnl|monDom2|scaffold_149 (901569-901694) | |
| 493-606, gnl|panTro1|chr20 (43594301-43594422) | |
| 493-606, gnl|rheMac2|chr19 (47811333-47811454) | |
| 493-606, gnl|rn3|chr1 (80924206-80924085) | |
| 493-606, gnl|tetNig1|chr16 (5092958-5093072) | |
| 493-606, gnl|xenTro1|scaffold_679 (541530-541647) | |
| 766-971, gnl|bosTau2|chr18 (45872058-45872263) | |
| 766-971, gnl|Hg17|chr19 (46619908-46620113) | |
| 766-971, gnl|Mm7|chr7 (22405592-22405396) | |
| 973-1116, gnl|bosTau2|chr18 (45872362-45872505) | |
| 973-1116, gnl|canFam2|chr1 (115489725-115489558) | |
| 973-1116, gnl|danRer3|chr18 (37177458-37177620) | |
| 973-1116, gnl|fr1|chrUn (65920679-65920829) | |
| 973-1116, gnl|hg17|chr19 (46620350-46620520) | |
| 973-1116, gnl|Hg17|chr19 (46620373-46620516) | |
| 973-1116, gnl|mm7|chr7 (22405264-22405095) | |
| 973-1116, gnl|Mm7|chr7 (22405240-22405097) | |
| 973-1116, gnl|monDom2|scaffold_149 (904367-904531) | |
| 973-1116, gnl|panTro1|chr20 (43602841-43603011) | |
| 973-1116, gnl|rheMac2|chr19 (47820014-47820184) | |
| 973-1116, gnl|rn3|chr1 (80917562-80917393) | |
| 973-1116, gnl|tetNig1|chr16 (5093677-5093838) | |
| 973-1116, gnl|xenTro1|scaffold_679 (543336-543501) | |
| 1286-1752, gnl|bosTau2|chr18 (45873793-45874253) | |
| 1286-1752, gnl|Hg17|chr19 (46622181-46622686) | |
| 1286-1752, gnl|Mm7|chr7 (22404191-22403754) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr18 (45855049-45855157) | |
| 1-109, gnl|canFam2|chr1 (115507818-115507537) | |
| 1-109, gnl|dasNov1|scaffold_68677 (1314-1640) | |
| 1-109, gnl|echTel1|scaffold_113038 (97-420) | |
| 1-109, gnl|hg17|chr19 (46595544-46595861) | |
| 1-109, gnl|Hg17|chr19 (46595573-46595681) | |
| 1-109, gnl|mm7|chr7 (22432469-22432178) | |
| 1-109, gnl|Mm7|chr7 (22432439-22432337) | |
| 1-109, gnl|monDom2|scaffold_149 (896000-896267) | |
| 1-109, gnl|rheMac2|chr19 (47792150-47792462) | |
| 1-109, gnl|rn3|chr1 (80944806-80944503) | |
| 223-408, gnl|bosTau2|chr18 (45864505-45864690) | |
| 223-408, gnl|Hg17|chr19 (46608382-46608561) | |
| 223-408, gnl|Mm7|chr7 (22415672-22415490) | |
| 493-606, gnl|bosTau2|chr18 (45868310-45868423) | |
| 493-606, gnl|canFam2|chr1 (115494984-115494866) | |
| 493-606, gnl|danRer3|chr18 (37173399-37173520) | |
| 493-606, gnl|echTel1|scaffold_277434 (811-692) | |
| 493-606, gnl|fr1|chrUn (65919956-65920074) | |
| 493-606, gnl|hg17|chr19 (46611789-46611910) | |
| 493-606, gnl|Hg17|chr19 (46611791-46611904) | |
| 493-606, gnl|mm7|chr7 (22412123-22412002) | |
| 493-606, gnl|Mm7|chr7 (22412119-22412006) | |
| 493-606, gnl|monDom2|scaffold_149 (901569-901694) | |
| 493-606, gnl|panTro1|chr20 (43594301-43594422) | |
| 493-606, gnl|rheMac2|chr19 (47811333-47811454) | |
| 493-606, gnl|rn3|chr1 (80924206-80924085) | |
| 493-606, gnl|tetNig1|chr16 (5092958-5093072) | |
| 493-606, gnl|xenTro1|scaffold_679 (541530-541647) | |
| 766-971, gnl|bosTau2|chr18 (45872058-45872263) | |
| 766-971, gnl|Hg17|chr19 (46619908-46620113) | |
| 766-971, gnl|Mm7|chr7 (22405592-22405396) | |
| 973-1116, gnl|bosTau2|chr18 (45872362-45872505) | |
| 973-1116, gnl|canFam2|chr1 (115489725-115489558) | |
| 973-1116, gnl|danRer3|chr18 (37177458-37177620) | |
| 973-1116, gnl|fr1|chrUn (65920679-65920829) | |
| 973-1116, gnl|hg17|chr19 (46620350-46620520) | |
| 973-1116, gnl|Hg17|chr19 (46620373-46620516) | |
| 973-1116, gnl|mm7|chr7 (22405264-22405095) | |
| 973-1116, gnl|Mm7|chr7 (22405240-22405097) | |
| 973-1116, gnl|monDom2|scaffold_149 (904367-904531) | |
| 973-1116, gnl|panTro1|chr20 (43602841-43603011) | |
| 973-1116, gnl|rheMac2|chr19 (47820014-47820184) | |
| 973-1116, gnl|rn3|chr1 (80917562-80917393) | |
| 973-1116, gnl|tetNig1|chr16 (5093677-5093838) | |
| 973-1116, gnl|xenTro1|scaffold_679 (543336-543501) | |
| 1286-1752, gnl|bosTau2|chr18 (45873793-45874253) | |
| 1286-1752, gnl|Hg17|chr19 (46622181-46622686) | |
| 1286-1752, gnl|Mm7|chr7 (22404191-22403754) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| hyp (0.42851) | |
| fhi (0.339155) | |
| pty (0.285429) | |
| eep (0.245128) | |
| ece (0.229305) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| fhi (0.339155) | |
| pty (0.285429) | |
| eep (0.245128) | |
| ece (0.229305) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |