Non-Coding RNA Search

Ss1.1-Pig1-115P23.5

Sequence:


               
               GTTGCAGACAACATTTCTCGGCAAATCTTGAACGGGGAGCTGACGGGAGGAGCCTTCCGA
AATGGACGTCGAACATGCCTGCCAGCTCCCTGTCCTGACACCAGTAACATTAACCTGTGG
AATATCTTGAGGAACAACATTGGTAAAGACCTGTCCAAAGTCTCCATGCCTGTGGAGCTG
AATGAGCCACTCAATACTCTGCAGCATCTCTGCGAGGAGATCGAATACAGTGAGCTTCTG
GACAAGGCTTCGGAAACCGACAATCCTTATGAGCGCATGGTTCTTATTGCTGCATTTGCA
GTTTCAGGATATTGCTCCACCTATTTCAGAGCAGGAAGTAAGCCATTCAACCCTGTCCTT
GGGGAGACTTATGAATGCATTAGAGAGGACAAAGGATTCCGATTTTTCTCAGAACAGGTT
AGCCATCATCCACCCATTTCTGCCTGTCACTGTGAATCCAAGAATTTTGTGTTTTGGCAA
GATATCAGATGGAAAAACAAGTTCTGGGGGAAGTCGATGGAAATCCTGCCTGTGGGAACC
CTGAATGTCATGCTTCCAAAGTATGGCGATTGCTATTTCCTTTTGGTCTCTTCTCTGCTT
TTCTAAATCATAAATGGGTATTTGAAACTCTGGAAGGTGCCAAGGGGCAGTTATCCTCTA
TGACCAATGCTTCTGTTAACTTCACCAAAGTTTTGAAACTGGATCCCCACAAAAGCAGTT
GAGAAATTTAGCATATGTGTCAAAGCTTCCTTTTTAGCTCTTCGCATCCTCCATTCCTTA
GTCAGCACCTACCTGTTCCAGTCACCATGTAAGTTTGCATTTTATACAAAAGGTTCTTTT
TCTAGCCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCAGACAACATTTCTCGGCAAATCTTGAACGGGGAGCTGACGGGAGGAGCCTTCCGA
AATGGACGTCGAACATGCCTGCCAGCTCCCTGTCCTGACACCAGTAACATTAACCTGTGG
AATATCTTGAGGAACAACATTGGTAAAGACCTGTCCAAAGTCTCCATGCCTGTGGAGCTG
AATGAGCCACTCAATACTCTGCAGCATCTCTGCGAGGAGATCGAATACAGTGAGCTTCTG
GACAAGGCTTCGGAAACCGACAATCCTTATGAGCGCATGGTTCTTATTGCTGCATTTGCA
GTTTCAGGATATTGCTCCACCTATTTCAGAGCAGGAAGTAAGCCATTCAACCCTGTCCTT
GGGGAGACTTATGAATGCATTAGAGAGGACAAAGGATTCCGATTTTTCTCAGAACAGGTT
AGCCATCATCCACCCATTTCTGCCTGTCACTGTGAATCCAAGAATTTTGTGTTTTGGCAA
GATATCAGATGGAAAAACAAGTTCTGGGGGAAGTCGATGGAAATCCTGCCTGTGGGAACC
CTGAATGTCATGCTTCCAAAGTATGGCGATTGCTATTTCCTTTTGGTCTCTTCTCTGCTT
TTCTAAATCATAAATGGGTATTTGAAACTCTGGAAGGTGCCAAGGGGCAGTTATCCTCTA
TGACCAATGCTTCTGTTAACTTCACCAAAGTTTTGAAACTGGATCCCCACAAAAGCAGTT
GAGAAATTTAGCATATGTGTCAAAGCTTCCTTTTTAGCTCTTCGCATCCTCCATTCCTTA
GTCAGCACCTACCTGTTCCAGTCACCATGTAAGTTTGCATTTTATACAAAAGGTTCTTTT
TCTAGCCATTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-264, - strand, RNAz p=0.519251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-264, - strand, RNAz p=0.519251

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               26-281, gnl|bosTau2|chr2 (8825838-8825583)
               

               
               26-281, gnl|canFam2|chr36 (25037459-25037779)
               

               
               26-281, gnl|danRer3|chr9 (241887-242177)
               

               
               26-281, gnl|dasNov1|scaffold_15861 (12695-13022)
               

               
               26-281, gnl|echTel1|scaffold_321454 (37279-36971)
               

               
               26-281, gnl|fr1|chrUn (76680699-76680405)
               

               
               26-281, gnl|galGal2|chr7 (16242001-16241703)
               

               
               26-281, gnl|hg17|chr2 (179073230-179073545)
               

               
               26-281, gnl|Hg17|chr2 (179073258-179073513)
               

               
               26-281, gnl|loxAfr1|scaffold_37535 (8130-8444)
               

               
               26-281, gnl|mm7|chr2 (76428702-76429014)
               

               
               26-281, gnl|Mm7|chr2 (76428732-76428987)
               

               
               26-281, gnl|monDom2|scaffold_2 (79179615-79179941)
               

               
               26-281, gnl|oryCun1|scaffold_211384 (63891-64202)
               

               
               26-281, gnl|panTro1|chr13 (68858265-68858580)
               

               
               26-281, gnl|rheMac2|chr12 (42030472-42030782)
               

               
               26-281, gnl|rn3|chr3 (59173333-59173645)
               

               
               26-281, gnl|tetNig1|chr2 (10932972-10932682)
               

               
               26-281, gnl|xenTro1|scaffold_546 (195840-196112)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-281, gnl|bosTau2|chr2 (8825838-8825583)
               

               
               26-281, gnl|canFam2|chr36 (25037459-25037779)
               

               
               26-281, gnl|danRer3|chr9 (241887-242177)
               

               
               26-281, gnl|dasNov1|scaffold_15861 (12695-13022)
               

               
               26-281, gnl|echTel1|scaffold_321454 (37279-36971)
               

               
               26-281, gnl|fr1|chrUn (76680699-76680405)
               

               
               26-281, gnl|galGal2|chr7 (16242001-16241703)
               

               
               26-281, gnl|hg17|chr2 (179073230-179073545)
               

               
               26-281, gnl|Hg17|chr2 (179073258-179073513)
               

               
               26-281, gnl|loxAfr1|scaffold_37535 (8130-8444)
               

               
               26-281, gnl|mm7|chr2 (76428702-76429014)
               

               
               26-281, gnl|Mm7|chr2 (76428732-76428987)
               

               
               26-281, gnl|monDom2|scaffold_2 (79179615-79179941)
               

               
               26-281, gnl|oryCun1|scaffold_211384 (63891-64202)
               

               
               26-281, gnl|panTro1|chr13 (68858265-68858580)
               

               
               26-281, gnl|rheMac2|chr12 (42030472-42030782)
               

               
               26-281, gnl|rn3|chr3 (59173333-59173645)
               

               
               26-281, gnl|tetNig1|chr2 (10932972-10932682)
               

               
               26-281, gnl|xenTro1|scaffold_546 (195840-196112)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               ldo (0.0970026)

	26-281, gnl\|bosTau2\|chr2 (8825838-8825583)
	26-281, gnl\|canFam2\|chr36 (25037459-25037779)
	26-281, gnl\|danRer3\|chr9 (241887-242177)
	26-281, gnl\|dasNov1\|scaffold_15861 (12695-13022)
	26-281, gnl\|echTel1\|scaffold_321454 (37279-36971)
	26-281, gnl\|fr1\|chrUn (76680699-76680405)
	26-281, gnl\|galGal2\|chr7 (16242001-16241703)
	26-281, gnl\|hg17\|chr2 (179073230-179073545)
	26-281, gnl\|Hg17\|chr2 (179073258-179073513)
	26-281, gnl\|loxAfr1\|scaffold_37535 (8130-8444)
	26-281, gnl\|mm7\|chr2 (76428702-76429014)
	26-281, gnl\|Mm7\|chr2 (76428732-76428987)
	26-281, gnl\|monDom2\|scaffold_2 (79179615-79179941)
	26-281, gnl\|oryCun1\|scaffold_211384 (63891-64202)
	26-281, gnl\|panTro1\|chr13 (68858265-68858580)
	26-281, gnl\|rheMac2\|chr12 (42030472-42030782)
	26-281, gnl\|rn3\|chr3 (59173333-59173645)
	26-281, gnl\|tetNig1\|chr2 (10932972-10932682)
	26-281, gnl\|xenTro1\|scaffold_546 (195840-196112)