Non-Coding RNA Search

Ss1.1-Pig1-116A09.5

Sequence:


               
               CGTTGCCCTCTAGCACTAAGGGACCGCTGGCTCTGGGCTCCACTGAGCCCCAGGCCAGTC
CAGAGCCCTCTGGGTTGGCCTGCTGGTCTCAGTGCTTCTTACCCCCTCGTGGAGGGTTCA
CATCAGTATTGGAGTTCATTCCTGTAGCATCGCTCCCTCCCGGCACACTCCCTGTAGCTG
CTCTTTAGGGTTCCCTCCCGCCTGTCCTAACCCAGGGCATTTGGGTGGGGGAGCCTTGCC
TTTCCCTGTCACAGCCCCAGGGTCTCACCTCGGGTACTGGCGTTGCCAGTAGAGGCTGTT
CTTTCCTGCTCCTGCCAGGAGGCGTGACTCATTGGTTCACTCCGCCCTGGCGCCCTCCCC
CCTCCCTTCATGGAGAAACAGGCCTGAAATCAAACGGGTAAAAGCCCTGGGCCATCCCTG
TCTTCCTGTCCCTTGTCTGCCCGGTTGGCACCCACCGGTGACCTCCAGGCACTGAGGAGT
GAAAGCGCCTAGGGCTGGAGCGTAGCTCTGAGTTGGGTCTGTGACCCTTCCTCTTCCTGC
CTCACAGGATTGGGACCCCCCAGCCCCTGCCCTCAAAGCTTCAGGCCCCTCAGGTAGCAG
CAGGACCTTGTGATCTTGGCCCCTTGGAACTGAGATGGTTTTGCATCTTTCCAGGAGAGC
CTCAAATTCTTCTTCCAGGTTGTATCCCCCCCCCCCAGTTAGCATATCCCAGGCTCGCAG
ACTCAACACAGCAGGGTGGGAGACAGCTGGGCACAGAGGGGGAGCTGCGTTCCGTACGGG
CTCTAAAGCCACAGAACTGACAAGCCCCTGCTTCCCCACCCCCTCCTCAGGCTCCTGCGA
GCACACCCCGAGCCCCATATCCCTGCCTGTTCCACGCGCCGCCGGGGAACAGCAGAACTT
CTCCCTGACCCCCCTTCCTGTCATGATCCCAGCCCTCCCTCGAAAGCTTTCTCCCCACAG
GACACTGGCCGAACCTCTGTCCTTGGGCCGGAACCAATGAGAAGGAAGCTCAGCACTCCT
CCACGGTTGCCCTGTTGAAGATAATGTTTTTATTAACTGAATTATTATGTTTTTTTCATG
GACCAAAATTTTTTTTTGTACTGCCCCCCTTATCGATGTCACCCAGTTTTAATAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTGCCCTCTAGCACTAAGGGACCGCTGGCTCTGGGCTCCACTGAGCCCCAGGCCAGTC
CAGAGCCCTCTGGGTTGGCCTGCTGGTCTCAGTGCTTCTTACCCCCTCGTGGAGGGTTCA
CATCAGTATTGGAGTTCATTCCTGTAGCATCGCTCCCTCCCGGCACACTCCCTGTAGCTG
CTCTTTAGGGTTCCCTCCCGCCTGTCCTAACCCAGGGCATTTGGGTGGGGGAGCCTTGCC
TTTCCCTGTCACAGCCCCAGGGTCTCACCTCGGGTACTGGCGTTGCCAGTAGAGGCTGTT
CTTTCCTGCTCCTGCCAGGAGGCGTGACTCATTGGTTCACTCCGCCCTGGCGCCCTCCCC
CCTCCCTTCATGGAGAAACAGGCCTGAAATCAAACGGGTAAAAGCCCTGGGCCATCCCTG
TCTTCCTGTCCCTTGTCTGCCCGGTTGGCACCCACCGGTGACCTCCAGGCACTGAGGAGT
GAAAGCGCCTAGGGCTGGAGCGTAGCTCTGAGTTGGGTCTGTGACCCTTCCTCTTCCTGC
CTCACAGGATTGGGACCCCCCAGCCCCTGCCCTCAAAGCTTCAGGCCCCTCAGGTAGCAG
CAGGACCTTGTGATCTTGGCCCCTTGGAACTGAGATGGTTTTGCATCTTTCCAGGAGAGC
CTCAAATTCTTCTTCCAGGTTGTATCCCCCCCCCCCAGTTAGCATATCCCAGGCTCGCAG
ACTCAACACAGCAGGGTGGGAGACAGCTGGGCACAGAGGGGGAGCTGCGTTCCGTACGGG
CTCTAAAGCCACAGAACTGACAAGCCCCTGCTTCCCCACCCCCTCCTCAGGCTCCTGCGA
GCACACCCCGAGCCCCATATCCCTGCCTGTTCCACGCGCCGCCGGGGAACAGCAGAACTT
CTCCCTGACCCCCCTTCCTGTCATGATCCCAGCCCTCCCTCGAAAGCTTTCTCCCCACAG
GACACTGGCCGAACCTCTGTCCTTGGGCCGGAACCAATGAGAAGGAAGCTCAGCACTCCT
CCACGGTTGCCCTGTTGAAGATAATGTTTTTATTAACTGAATTATTATGTTTTTTTCATG
GACCAAAATTTTTTTTTGTACTGCCCCCCTTATCGATGTCACCCAGTTTTAATAAAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               723-917, - strand, RNAz p=0.998232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               723-917, - strand, RNAz p=0.998232

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               733-864, - strand, RNAmicro p=0.935271

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               733-864, - strand, RNAmicro p=0.935271

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               568-1140, gnl|bosTau2|chr20 (11177379-11176827)
               

               
               568-1140, gnl|Hg17|chr12 (48780125-48780683)
               

               
               568-1140, gnl|Mm7|chr15 (99698654-99699212)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               568-1140, gnl|bosTau2|chr20 (11177379-11176827)
               

               
               568-1140, gnl|Hg17|chr12 (48780125-48780683)
               

               
               568-1140, gnl|Mm7|chr15 (99698654-99699212)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cbr (0.127975)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cbr (0.127975)
               

               
               nbm (0.0993246)

	568-1140, gnl\|bosTau2\|chr20 (11177379-11176827)
	568-1140, gnl\|Hg17\|chr12 (48780125-48780683)
	568-1140, gnl\|Mm7\|chr15 (99698654-99699212)

	ebs (0.236602)
	fcc (0.197785)
	eje (0.197668)
	fty (0.17584)
	fbs (0.175346)
	cbr (0.127975)
	nbm (0.0993246)