Non-Coding RNA Search

Ss1.1-Pig1-116B18.5

Sequence:


               
               CAAAAAAAAATGAGTGATTTCCTTTTTTTTGTATTTTATGCATTTATGTCATGCTTTCTC
TTATCCGTAATGTGCAATTCTTTTGAGAGGAATAAAAGTGCTATATATAGTTCTATATGG
TACAAGTAAAATCATACTATTTGAATTATGACCTAGGAATTTTTGGCTTCCTTGCCTACC
TAAGAAGGTGGTAACAAACCCATGATTTTCTATTTCGGCGGCAGTGCTCTGTGAGCAAAA
CAAATGCACTTCTGGCATATATCTTCATTTAGCCATATATGCCGGAGTACATTAATATGC
ACAGATGAGATTGGTGGATGTGAATCTAGCTTCACGCTGGTCCTACTCCATAGACGGGGC
GCTACGTTTCTGGAAATATAACAGGCACACAGGATGAATGGTGGTGTGTCGCCTAGAACA
GGAAAGCCTTAGCAGCACATGGGTCACCTGGAGATCTTGTGACAGTGAGCCTCTGATTCC
GAGGATGAGATGGGCCTGAAATTCTGCATTCTGAACAGCTGCCAGGCTGTCCAGGCTGCC
AGCCCGAAGACCACACTCTGAGAAGCTAGGACCTAGGGGATACTTACAATAAAAACAAAC
ATGACTGTATTTCCGACTCCCCTCCTCTTCACATTACCTGACTTTTTAATTTTTATGCAC
ATGCTAATCACATCACTCCTGCATTAATAACACAGGGCATCTTTTTTAAAAAGGGGGAAA
AGATGCATCGAGCTTGTTTGTCAAATACTACAGTATTTTACTCATTGTTATCTTGCCAAT
GGAAATGAAATATGATATTGCCTTTAAATATTATATTTATACCTCATGTATATTTTTTAC
CTCAATTGTTGGTATCAATCATCAATTGTAAATAAATAATTGCCAAGGCAAATAAATTTA
TATCCATTAAATATATCCTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAAAAATGAGTGATTTCCTTTTTTTTGTATTTTATGCATTTATGTCATGCTTTCTC
TTATCCGTAATGTGCAATTCTTTTGAGAGGAATAAAAGTGCTATATATAGTTCTATATGG
TACAAGTAAAATCATACTATTTGAATTATGACCTAGGAATTTTTGGCTTCCTTGCCTACC
TAAGAAGGTGGTAACAAACCCATGATTTTCTATTTCGGCGGCAGTGCTCTGTGAGCAAAA
CAAATGCACTTCTGGCATATATCTTCATTTAGCCATATATGCCGGAGTACATTAATATGC
ACAGATGAGATTGGTGGATGTGAATCTAGCTTCACGCTGGTCCTACTCCATAGACGGGGC
GCTACGTTTCTGGAAATATAACAGGCACACAGGATGAATGGTGGTGTGTCGCCTAGAACA
GGAAAGCCTTAGCAGCACATGGGTCACCTGGAGATCTTGTGACAGTGAGCCTCTGATTCC
GAGGATGAGATGGGCCTGAAATTCTGCATTCTGAACAGCTGCCAGGCTGTCCAGGCTGCC
AGCCCGAAGACCACACTCTGAGAAGCTAGGACCTAGGGGATACTTACAATAAAAACAAAC
ATGACTGTATTTCCGACTCCCCTCCTCTTCACATTACCTGACTTTTTAATTTTTATGCAC
ATGCTAATCACATCACTCCTGCATTAATAACACAGGGCATCTTTTTTAAAAAGGGGGAAA
AGATGCATCGAGCTTGTTTGTCAAATACTACAGTATTTTACTCATTGTTATCTTGCCAAT
GGAAATGAAATATGATATTGCCTTTAAATATTATATTTATACCTCATGTATATTTTTTAC
CTCAATTGTTGGTATCAATCATCAATTGTAAATAAATAATTGCCAAGGCAAATAAATTTA
TATCCATTAAATATATCCTTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               31-918, gnl|bosTau2|chr11 (43884149-43885005)
               

               
               31-918, gnl|Hg17|chr13 (32576229-32575289)
               

               
               31-918, gnl|Mm7|chr5 (149970912-149970017)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-918, gnl|bosTau2|chr11 (43884149-43885005)
               

               
               31-918, gnl|Hg17|chr13 (32576229-32575289)
               

               
               31-918, gnl|Mm7|chr5 (149970912-149970017)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               col (0.195008)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	31-918, gnl\|bosTau2\|chr11 (43884149-43885005)
	31-918, gnl\|Hg17\|chr13 (32576229-32575289)
	31-918, gnl\|Mm7\|chr5 (149970912-149970017)

	col (0.195008)
	cmu (0.186393)
	gul (0.177588)
	tbr (0.154178)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	nmm (0.132802)
	kid (0.129735)
	spc (0.113366)
	cty (0.10408)