Non-Coding RNA Search

Ss1.1-Pig1-116D20.5

Sequence:


               
               GGATGACACCTCGGTGGTGGAAGATGGCCGCAAGAAGCTCAACACGCTGGCACATTACAA
GATCCCTGAAGGTGCCTCCCTGGCCATGAGCCTCACAGACAAGAAGGACAACACCCTGGG
TCGAGTGAAGGACTTGGACACGGAGAAGTATTTCCATTTGGTGCTGCCCACGGATGAGCT
GACTGAGCCCAAGAAGTCCCACCGGCAAAGTCACCGCAAGAAGGTGCTGCCGGAGATCTA
CCTGACGCGCCTGCTGTCCACCAAGGGCACGCTGCAGAAGTTTCTAGATGACCTGTTCAA
GGCCATTCTGAGCATCCGTGAAGACAAGCCCCCACTGGCCGTCAAGTACTTCTTTGACTT
CCTGGAAGAGCAAGCTGAGAAGAGGGGCATCTCAGACCCTGACACGTTGCACATCTGGAA
GACCAACAGCCTTCCTCTCCGGTTCTGGGTGAACATCCTGAAAAACCCTCAGTTTGTCTT
CGACATCGACAAGACGGACCACATTGACGCCTGCCTCTCAGTCATCGCGCAGGCCTTCAT
TGATGCCTGCTCCATCTCCGACCTGCAGCTGGGCAAGGATTCTCCAACCAACAAGCTCCT
CTATGCCAAGGAGATTCCTGAGTACCGGAAAATCGTGCAGCGCTACTACAAACAGATCCA
TGACATGACCCCACTCAGTGAGCAGGAGATGAATGCGCACCTGGCTGAGGAGTCGAGGAA
GTACCAGAATGAGTTCAACACCAACGTGGCCATGGCAGAGATTTATAAATACGCCAAGAG
GTATCGCACCCAGATTGTGGCCGCCCTGGAGGCAAACCCCACGGCGCGGAGGACACAGCT
GCAGCACAAGTTTGAGCAGGTGGTGGCCCTGATGGAGGACAACATCTATGAGTGCTACAG
CGAGGCCTGAGCCCTTGTTGCCTGGGGACGGGTGCCCACTCTCTGCTTCCTTGTGTCCCC
CGTGCCTCTGACTCCGGCTGGGAAATAACTGAACAGAGGCCTGGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGACACCTCGGTGGTGGAAGATGGCCGCAAGAAGCTCAACACGCTGGCACATTACAA
GATCCCTGAAGGTGCCTCCCTGGCCATGAGCCTCACAGACAAGAAGGACAACACCCTGGG
TCGAGTGAAGGACTTGGACACGGAGAAGTATTTCCATTTGGTGCTGCCCACGGATGAGCT
GACTGAGCCCAAGAAGTCCCACCGGCAAAGTCACCGCAAGAAGGTGCTGCCGGAGATCTA
CCTGACGCGCCTGCTGTCCACCAAGGGCACGCTGCAGAAGTTTCTAGATGACCTGTTCAA
GGCCATTCTGAGCATCCGTGAAGACAAGCCCCCACTGGCCGTCAAGTACTTCTTTGACTT
CCTGGAAGAGCAAGCTGAGAAGAGGGGCATCTCAGACCCTGACACGTTGCACATCTGGAA
GACCAACAGCCTTCCTCTCCGGTTCTGGGTGAACATCCTGAAAAACCCTCAGTTTGTCTT
CGACATCGACAAGACGGACCACATTGACGCCTGCCTCTCAGTCATCGCGCAGGCCTTCAT
TGATGCCTGCTCCATCTCCGACCTGCAGCTGGGCAAGGATTCTCCAACCAACAAGCTCCT
CTATGCCAAGGAGATTCCTGAGTACCGGAAAATCGTGCAGCGCTACTACAAACAGATCCA
TGACATGACCCCACTCAGTGAGCAGGAGATGAATGCGCACCTGGCTGAGGAGTCGAGGAA
GTACCAGAATGAGTTCAACACCAACGTGGCCATGGCAGAGATTTATAAATACGCCAAGAG
GTATCGCACCCAGATTGTGGCCGCCCTGGAGGCAAACCCCACGGCGCGGAGGACACAGCT
GCAGCACAAGTTTGAGCAGGTGGTGGCCCTGATGGAGGACAACATCTATGAGTGCTACAG
CGAGGCCTGAGCCCTTGTTGCCTGGGGACGGGTGCCCACTCTCTGCTTCCTTGTGTCCCC
CGTGCCTCTGACTCCGGCTGGGAAATAACTGAACAGAGGCCTGGGGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28277167|gb|AAH44228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28277167|gb|AAH44228.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               264-429, gnl|bosTau2|chr8 (40923863-40923698)
               

               
               264-429, gnl|Hg17|chr3 (130761326-130761161)
               

               
               264-429, gnl|Mm7|chr6 (115984365-115984200)
               


               
               576-718, gnl|bosTau2|chr8 (40921583-40921441)
               

               
               576-718, gnl|Hg17|chr3 (130758766-130758624)
               

               
               576-718, gnl|Mm7|chr6 (115982410-115982268)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-429, gnl|bosTau2|chr8 (40923863-40923698)
               

               
               264-429, gnl|Hg17|chr3 (130761326-130761161)
               

               
               264-429, gnl|Mm7|chr6 (115984365-115984200)
               


               
               576-718, gnl|bosTau2|chr8 (40921583-40921441)
               

               
               576-718, gnl|Hg17|chr3 (130758766-130758624)
               

               
               576-718, gnl|Mm7|chr6 (115982410-115982268)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	264-429, gnl\|bosTau2\|chr8 (40923863-40923698)
	264-429, gnl\|Hg17\|chr3 (130761326-130761161)
	264-429, gnl\|Mm7\|chr6 (115984365-115984200)

	576-718, gnl\|bosTau2\|chr8 (40921583-40921441)
	576-718, gnl\|Hg17\|chr3 (130758766-130758624)
	576-718, gnl\|Mm7\|chr6 (115982410-115982268)