Non-Coding RNA Search

Ss1.1-Pig1-116O07.5

Sequence:


               
               TGTGAGTGTCTGTGACCGTGACTGCGTACCTGTGACTGTGCAGCGCCCGTGGTGATCTGG
GGTAGGGGGCACCCCTACAGTGGGACCCCTCCCCCACTATTCTTCCTGTCTAGCCCTTCC
CTTCCAGTGGAGCAGCTCCAGACCCATCCCTCAACCCCGTGATCCCTCCCAGCTAGGGTT
GTGAGGATGCGAGGTGGCTGGGAGGGTTTCCAGGCCCCCTGTCCCATCCCCAGAACCGGG
ATGGTTGGGTGGATTTACCTGACCCAGCCCTGCCTCCAGTCAACCCAGCCCTTGGGCCGT
CTGTGTCAGTGGTTTCTGGTCTTTTTTTTTCCCACCCCCTCCCCCTTGGGCTAAAATATT
TTGCAAAGGATCAGGTAATTGGGGAGAGGAGAGGGGCGGGGGCGGAGGGGGGGGACACCC
CCCTCATCTCCTCCGAGGCAGGTGGTGTGAATCTTCTTCAACAGCAATTAAAGAGGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGTGTCTGTGACCGTGACTGCGTACCTGTGACTGTGCAGCGCCCGTGGTGATCTGG
GGTAGGGGGCACCCCTACAGTGGGACCCCTCCCCCACTATTCTTCCTGTCTAGCCCTTCC
CTTCCAGTGGAGCAGCTCCAGACCCATCCCTCAACCCCGTGATCCCTCCCAGCTAGGGTT
GTGAGGATGCGAGGTGGCTGGGAGGGTTTCCAGGCCCCCTGTCCCATCCCCAGAACCGGG
ATGGTTGGGTGGATTTACCTGACCCAGCCCTGCCTCCAGTCAACCCAGCCCTTGGGCCGT
CTGTGTCAGTGGTTTCTGGTCTTTTTTTTTCCCACCCCCTCCCCCTTGGGCTAAAATATT
TTGCAAAGGATCAGGTAATTGGGGAGAGGAGAGGGGCGGGGGCGGAGGGGGGGGACACCC
CCCTCATCTCCTCCGAGGCAGGTGGTGTGAATCTTCTTCAACAGCAATTAAAGAGGAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-480, - strand, RNAz p=0.999809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-480, - strand, RNAz p=0.999809

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               139-299, + strand, RNAmicro p=0.999988
               

               
               378-467, - strand, RNAmicro p=0.936204

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               139-299, + strand, RNAmicro p=0.999988
               

               
               378-467, - strand, RNAmicro p=0.936204

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               41-321, AV592285 Bos taurus brain fetus Bos taurus cDNA clone E1BR023F07 
(dbj|AV592285.1|), blast E-value=0, identity=90.53% 
               

               
               41-321, BX413698 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX413698.2|), blast E-value=0, identity=88.73% 
               

               
               41-321, wb33a11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI671506.1|), 
blast E-value=0, identity=88.73% 
               

               
               41-321, UI-E-EJ0-air-f-01-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM726931.1|), blast E-value=0, identity=88.73% 
               

               
               41-321, BovGen_04615 normal cattle brain Bos taurus cDNA clone (gb|CO876290.1|), 
blast E-value=0, identity=90.53% 
               

               
               41-480, LB02729.CR_N18 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894241.1|), 
blast E-value=0.0000000000005, identity=91.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               41-321, AV592285 Bos taurus brain fetus Bos taurus cDNA clone E1BR023F07 
(dbj|AV592285.1|), blast E-value=0, identity=90.53% 
               

               
               41-321, BX413698 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX413698.2|), blast E-value=0, identity=88.73% 
               

               
               41-321, wb33a11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI671506.1|), 
blast E-value=0, identity=88.73% 
               

               
               41-321, UI-E-EJ0-air-f-01-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM726931.1|), blast E-value=0, identity=88.73% 
               

               
               41-321, BovGen_04615 normal cattle brain Bos taurus cDNA clone (gb|CO876290.1|), 
blast E-value=0, identity=90.53% 
               

               
               41-480, LB02729.CR_N18 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894241.1|), 
blast E-value=0.0000000000005, identity=91.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr5 (34303462-34302989)
               

               
               1-480, gnl|Hg17|chr12 (56405726-56405258)
               

               
               1-480, gnl|Mm7|chr10 (126590171-126590637)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr5 (34303462-34302989)
               

               
               1-480, gnl|Hg17|chr12 (56405726-56405258)
               

               
               1-480, gnl|Mm7|chr10 (126590171-126590637)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	139-299, + strand, RNAmicro p=0.999988
	378-467, - strand, RNAmicro p=0.936204

	41-321, AV592285 Bos taurus brain fetus Bos taurus cDNA clone E1BR023F07 (dbj\|AV592285.1\|), blast E-value=0, identity=90.53%
	41-321, BX413698 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX413698.2\|), blast E-value=0, identity=88.73%
	41-321, wb33a11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb\|AI671506.1\|), blast E-value=0, identity=88.73%
	41-321, UI-E-EJ0-air-f-01-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM726931.1\|), blast E-value=0, identity=88.73%
	41-321, BovGen_04615 normal cattle brain Bos taurus cDNA clone (gb\|CO876290.1\|), blast E-value=0, identity=90.53%
	41-480, LB02729.CR_N18 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV894241.1\|), blast E-value=0.0000000000005, identity=91.94%

	1-480, gnl\|bosTau2\|chr5 (34303462-34302989)
	1-480, gnl\|Hg17\|chr12 (56405726-56405258)
	1-480, gnl\|Mm7\|chr10 (126590171-126590637)