Ss1.1-Pig1-116O09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATCCAGCACCCTGCCACCCAGGTTCTGATTGGAACTGACTCCATCACAAACCTGCAT AAGCTGGAGCAGGTGTCCAGCGATGAGGGCATTGGGACCCTGGCAGAGAACCTGCTGGAG GCGCTGCGGGAGCACCCTGATGTGAACAAGAAGATTGACGCGGCCCGCAGGGAGACCCGG GCCGAGAAGAAGCGCATGGCCATGGCCATGAGGCAGAAGGCTCTGGGCACCCTGGGCATG ACGACCAACGAAAAGGGCCAGGTCGTGACCAAGACGGCGCTCCTGAAGCAGATGGAGGAG CTGATTGAGGAGCCAGGCCTCACGTGCTGCATCTGCAGGGAGGGGTACAAGTTCCAGCCC ACCAAGGTCCTGGGCATTTACACCTTCACCAAGCGGGTGGCCTTGGAGGAGATGGAGAAT AAGCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATCGTGCACTATGAC TGCCACCTGGCTGCCGTCAGGCTGGCCCGAGGCCGGGAAGAGTGGGAGAGTGCTGCCCTT CAGAACGCCAACACTAAGTGCAACGGGCTCCTTCCGGTCTGGGGGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATCCAGCACCCTGCCACCCAGGTTCTGATTGGAACTGACTCCATCACAAACCTGCAT AAGCTGGAGCAGGTGTCCAGCGATGAGGGCATTGGGACCCTGGCAGAGAACCTGCTGGAG GCGCTGCGGGAGCACCCTGATGTGAACAAGAAGATTGACGCGGCCCGCAGGGAGACCCGG GCCGAGAAGAAGCGCATGGCCATGGCCATGAGGCAGAAGGCTCTGGGCACCCTGGGCATG ACGACCAACGAAAAGGGCCAGGTCGTGACCAAGACGGCGCTCCTGAAGCAGATGGAGGAG CTGATTGAGGAGCCAGGCCTCACGTGCTGCATCTGCAGGGAGGGGTACAAGTTCCAGCCC ACCAAGGTCCTGGGCATTTACACCTTCACCAAGCGGGTGGCCTTGGAGGAGATGGAGAAT AAGCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATCGTGCACTATGAC TGCCACCTGGCTGCCGTCAGGCTGGCCCGAGGCCGGGAAGAGTGGGAGAGTGCTGCCCTT CAGAACGCCAACACTAAGTGCAACGGGCTCCTTCCGGTCTGGGGGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 22-140, + strand, RNAz p=0.881299 | |
| 147-243, + strand, RNAz p=0.516673 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 22-140, + strand, RNAz p=0.881299 | |
| 147-243, + strand, RNAz p=0.516673 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC007962, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 22-243, gnl|bosTau2|chr2 (61006306-61006085) | |
| 22-243, gnl|canFam2|chr2 (82416711-82416428) | |
| 22-243, gnl|danRer3|chr23 (23284034-23284323) | |
| 22-243, gnl|dasNov1|scaffold_1177 (98861-99143) | |
| 22-243, gnl|echTel1|scaffold_323227 (120016-119771) | |
| 22-243, gnl|fr1|chrUn (192782002-192781764) | |
| 22-243, gnl|galGal2|chr21 (4414403-4414654) | |
| 22-243, gnl|hg17|chr1 (19160540-19160823) | |
| 22-243, gnl|Hg17|chr1 (19160780-19160559) | |
| 22-243, gnl|loxAfr1|scaffold_31624 (11157-10878) | |
| 22-243, gnl|mm7|chr4 (138854804-138854527) | |
| 22-243, gnl|Mm7|chr4 (138854569-138854790) | |
| 22-243, gnl|monDom2|scaffold_90 (155408-155682) | |
| 22-243, gnl|oryCun1|scaffold_172466 (28406-28682) | |
| 22-243, gnl|panTro1|chr1 (19450565-19450848) | |
| 22-243, gnl|rheMac2|chr1 (21743502-21743785) | |
| 22-243, gnl|rn3|chr5 (158286851-158286568) | |
| 22-243, gnl|tetNig1|chr9 (1213900-1214138) | |
| 22-243, gnl|xenTro1|scaffold_1498 (135672-135422) | |
| 352-507, gnl|bosTau2|chr2 (61004009-61003854) | |
| 352-507, gnl|canFam2|chr2 (82418988-82418815) | |
| 352-507, gnl|danRer3|chr23 (23283617-23283786) | |
| 352-507, gnl|dasNov1|scaffold_1177 (96414-96594) | |
| 352-507, gnl|echTel1|scaffold_323227 (121764-121592) | |
| 352-507, gnl|fr1|chrUn (192782660-192782489) | |
| 352-507, gnl|galGal2|chr21 (4413589-4413755) | |
| 352-507, gnl|hg17|chr1 (19158472-19158645) | |
| 352-507, gnl|Hg17|chr1 (19158627-19158471) | |
| 352-507, gnl|loxAfr1|scaffold_8237 (60410-60236) | |
| 352-507, gnl|mm7|chr4 (138857510-138857337) | |
| 352-507, gnl|Mm7|chr4 (138857354-138857508) | |
| 352-507, gnl|monDom2|scaffold_90 (152543-152720) | |
| 352-507, gnl|oryCun1|scaffold_172466 (26483-26657) | |
| 352-507, gnl|panTro1|chr1 (19448498-19448671) | |
| 352-507, gnl|rheMac2|chr1 (21741433-21741606) | |
| 352-507, gnl|rn3|chr5 (158289665-158289492) | |
| 352-507, gnl|tetNig1|chr9 (1213390-1213561) | |
| 352-507, gnl|xenTro1|scaffold_1498 (137186-137031) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-243, gnl|bosTau2|chr2 (61006306-61006085) | |
| 22-243, gnl|canFam2|chr2 (82416711-82416428) | |
| 22-243, gnl|danRer3|chr23 (23284034-23284323) | |
| 22-243, gnl|dasNov1|scaffold_1177 (98861-99143) | |
| 22-243, gnl|echTel1|scaffold_323227 (120016-119771) | |
| 22-243, gnl|fr1|chrUn (192782002-192781764) | |
| 22-243, gnl|galGal2|chr21 (4414403-4414654) | |
| 22-243, gnl|hg17|chr1 (19160540-19160823) | |
| 22-243, gnl|Hg17|chr1 (19160780-19160559) | |
| 22-243, gnl|loxAfr1|scaffold_31624 (11157-10878) | |
| 22-243, gnl|mm7|chr4 (138854804-138854527) | |
| 22-243, gnl|Mm7|chr4 (138854569-138854790) | |
| 22-243, gnl|monDom2|scaffold_90 (155408-155682) | |
| 22-243, gnl|oryCun1|scaffold_172466 (28406-28682) | |
| 22-243, gnl|panTro1|chr1 (19450565-19450848) | |
| 22-243, gnl|rheMac2|chr1 (21743502-21743785) | |
| 22-243, gnl|rn3|chr5 (158286851-158286568) | |
| 22-243, gnl|tetNig1|chr9 (1213900-1214138) | |
| 22-243, gnl|xenTro1|scaffold_1498 (135672-135422) | |
| 352-507, gnl|bosTau2|chr2 (61004009-61003854) | |
| 352-507, gnl|canFam2|chr2 (82418988-82418815) | |
| 352-507, gnl|danRer3|chr23 (23283617-23283786) | |
| 352-507, gnl|dasNov1|scaffold_1177 (96414-96594) | |
| 352-507, gnl|echTel1|scaffold_323227 (121764-121592) | |
| 352-507, gnl|fr1|chrUn (192782660-192782489) | |
| 352-507, gnl|galGal2|chr21 (4413589-4413755) | |
| 352-507, gnl|hg17|chr1 (19158472-19158645) | |
| 352-507, gnl|Hg17|chr1 (19158627-19158471) | |
| 352-507, gnl|loxAfr1|scaffold_8237 (60410-60236) | |
| 352-507, gnl|mm7|chr4 (138857510-138857337) | |
| 352-507, gnl|Mm7|chr4 (138857354-138857508) | |
| 352-507, gnl|monDom2|scaffold_90 (152543-152720) | |
| 352-507, gnl|oryCun1|scaffold_172466 (26483-26657) | |
| 352-507, gnl|panTro1|chr1 (19448498-19448671) | |
| 352-507, gnl|rheMac2|chr1 (21741433-21741606) | |
| 352-507, gnl|rn3|chr5 (158289665-158289492) | |
| 352-507, gnl|tetNig1|chr9 (1213390-1213561) | |
| 352-507, gnl|xenTro1|scaffold_1498 (137186-137031) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |