Non-Coding RNA Search

Ss1.1-Pig1-116P23.5

Sequence:


               
               CTCTTGTCCCAGTGCTCTCGCTTCCTGCTCTGAGGATCCCTCTCATCTCTGTCCGCCCTC
ATGCTTCTTCCTCCCGACTTCGCCGTGTACAGTCTTTGTCTAGACGCCTTCCTTCCCTGG
CTCCACTGGGCCCTCATCCCCATGTCTTCCTCAAGACTGTGGTGCCCACCCGGTCTGAGC
TGCCAGTCTCCTCCTCCCCTCCCTGCCCCTGCCCCACAGGTTGTCGCCGTTGCTCAAGAG
CATCCCCGTCTGGCCCCGTGATGACGGTGGCCCAAGTCATCTGTGAGTGTCAGTCGTAGT
AGGCAGAGGCCTGCGACCAGATAAGTGCCCAGCTCAGGGCCCATTCCTTCCCTAGAACCT
CTTCCCAGCCACCCCTCTGGGTCCTGAGACTGCTCCCTCAGCCCTTACTGGGGCCAGTGC
GGTGTTGACCCGCTTCCCTCCTCTGCCCTCGCCCCCTTGCCTAGAGGGGCCTTGCCTAGA
GGGGCTTAGGAGTGTGGGATGAAGGAGGGCTTGACACAGGGCCTCGCGCCACTTCCCTCT
CTGCCCAAACAGCACTGCAGCCACAGCCACACCGTCAGGGCGCTCTCTGAGGTGGGAGGG
AAGGGGCTCCTCAGGGACCCGGCCCTTCCCACTGCCGCTCCCTCCTTTCCATCCGTGACT
CTTCCCTCTGCCTGCCGCCCCCAGGTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCA
TCCGCAACCTCAAGGAGAGGTTCCACATGAGCATGACGGAGGAGCAGCTGCAGCTGCTGG
TGGAGCAGATGGTAGACGGCAGCATGCGGTCGATCACCACCAAACTCTACGACGGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGTCCCAGTGCTCTCGCTTCCTGCTCTGAGGATCCCTCTCATCTCTGTCCGCCCTC
ATGCTTCTTCCTCCCGACTTCGCCGTGTACAGTCTTTGTCTAGACGCCTTCCTTCCCTGG
CTCCACTGGGCCCTCATCCCCATGTCTTCCTCAAGACTGTGGTGCCCACCCGGTCTGAGC
TGCCAGTCTCCTCCTCCCCTCCCTGCCCCTGCCCCACAGGTTGTCGCCGTTGCTCAAGAG
CATCCCCGTCTGGCCCCGTGATGACGGTGGCCCAAGTCATCTGTGAGTGTCAGTCGTAGT
AGGCAGAGGCCTGCGACCAGATAAGTGCCCAGCTCAGGGCCCATTCCTTCCCTAGAACCT
CTTCCCAGCCACCCCTCTGGGTCCTGAGACTGCTCCCTCAGCCCTTACTGGGGCCAGTGC
GGTGTTGACCCGCTTCCCTCCTCTGCCCTCGCCCCCTTGCCTAGAGGGGCCTTGCCTAGA
GGGGCTTAGGAGTGTGGGATGAAGGAGGGCTTGACACAGGGCCTCGCGCCACTTCCCTCT
CTGCCCAAACAGCACTGCAGCCACAGCCACACCGTCAGGGCGCTCTCTGAGGTGGGAGGG
AAGGGGCTCCTCAGGGACCCGGCCCTTCCCACTGCCGCTCCCTCCTTTCCATCCGTGACT
CTTCCCTCTGCCTGCCGCCCCCAGGTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCA
TCCGCAACCTCAAGGAGAGGTTCCACATGAGCATGACGGAGGAGCAGCTGCAGCTGCTGG
TGGAGCAGATGGTAGACGGCAGCATGCGGTCGATCACCACCAAACTCTACGACGGCTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               686-840, - strand, RNAz p=0.947805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               686-840, - strand, RNAz p=0.947805

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-840, gnl|bosTau2|chr3 (16257646-16258422)
               

               
               40-840, gnl|Hg17|chr1 (148079167-148078427)
               

               
               40-840, gnl|Mm7|chr3 (94879086-94879863)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-840, gnl|bosTau2|chr3 (16257646-16258422)
               

               
               40-840, gnl|Hg17|chr1 (148079167-148078427)
               

               
               40-840, gnl|Mm7|chr3 (94879086-94879863)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               cty (0.10408)

	40-840, gnl\|bosTau2\|chr3 (16257646-16258422)
	40-840, gnl\|Hg17\|chr1 (148079167-148078427)
	40-840, gnl\|Mm7\|chr3 (94879086-94879863)