Non-Coding RNA Search

Ss1.1-Pig1-117N05.5

Sequence:


               
               GGAAGATGAAGCCCCTGGTCCAAAGATGGCCCCTCCTGGGGATGAAGCCCCCACCCTAGG
AAAGGTCTTGACCCCGATGCAGGCGTCCTCTGAAGAGGCTTCCACTCGAGACAACTCTCA
GTTTCAACACTTCTCTCTGGAGGAAGCCCTGACAAATGCCAGGTCTCTTGAGGCCAGTGA
GGCTCAATCCCTAGAGGAGGTCCACATGCCAGAGGAGCACCCCCTCTCTGGAGTGAAGCA
TCCCCTGGATAAGGAGGAGAGTTCCCCTCTCCAGTCCGAATCCCAGTCCAAGCAAGGATC
CATGGCAGCCCTTGAGAAGGCCCACATCCGGGAAGAGGCTACCACCTTCCTGGAGGAGCC
ATCGGCAAAGTATGAGGCTGCTCCCCAAAAGGAGGAAACTCTCAAAGAAGAGAGATCCCC
TGAAGAGGTAACCCCGGCTGACCAGACCCCACAAGCCATCACGCCCCAAGTGACTCCCAC
CCTCCACGCCTGGGTCCTGCAAAATCTCACAGACAGTAAACGTGACAGAGACGACGTGAT
GAGGCTAAAGGACGAGGTGGAGGCTTTAAGGAGGTCGCTGGAGCAGATGGGACTGCAGCT
GGAAAAGAAGCTGACCGACATCTGGAAGGAGCTGAAGAGCGAGAGGGAAAAGCGCCAGTT
GCTGGAGGTGCAGATGAAGCGGAGGACCCAGGAGTCCCGGACTCGGGGCTCCCTCCACGC
GCAGACGCAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGATGAAGCCCCTGGTCCAAAGATGGCCCCTCCTGGGGATGAAGCCCCCACCCTAGG
AAAGGTCTTGACCCCGATGCAGGCGTCCTCTGAAGAGGCTTCCACTCGAGACAACTCTCA
GTTTCAACACTTCTCTCTGGAGGAAGCCCTGACAAATGCCAGGTCTCTTGAGGCCAGTGA
GGCTCAATCCCTAGAGGAGGTCCACATGCCAGAGGAGCACCCCCTCTCTGGAGTGAAGCA
TCCCCTGGATAAGGAGGAGAGTTCCCCTCTCCAGTCCGAATCCCAGTCCAAGCAAGGATC
CATGGCAGCCCTTGAGAAGGCCCACATCCGGGAAGAGGCTACCACCTTCCTGGAGGAGCC
ATCGGCAAAGTATGAGGCTGCTCCCCAAAAGGAGGAAACTCTCAAAGAAGAGAGATCCCC
TGAAGAGGTAACCCCGGCTGACCAGACCCCACAAGCCATCACGCCCCAAGTGACTCCCAC
CCTCCACGCCTGGGTCCTGCAAAATCTCACAGACAGTAAACGTGACAGAGACGACGTGAT
GAGGCTAAAGGACGAGGTGGAGGCTTTAAGGAGGTCGCTGGAGCAGATGGGACTGCAGCT
GGAAAAGAAGCTGACCGACATCTGGAAGGAGCTGAAGAGCGAGAGGGAAAAGCGCCAGTT
GCTGGAGGTGCAGATGAAGCGGAGGACCCAGGAGTCCCGGACTCGGGGCTCCCTCCACGC
GCAGACGCAGAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               108-603, gnl|bosTau2|chr3 (76605868-76605379)
               

               
               108-603, gnl|Hg17|chr1 (36454850-36455492)
               

               
               108-603, gnl|Mm7|chr4 (125596171-125595664)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-603, gnl|bosTau2|chr3 (76605868-76605379)
               

               
               108-603, gnl|Hg17|chr1 (36454850-36455492)
               

               
               108-603, gnl|Mm7|chr4 (125596171-125595664)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

	108-603, gnl\|bosTau2\|chr3 (76605868-76605379)
	108-603, gnl\|Hg17\|chr1 (36454850-36455492)
	108-603, gnl\|Mm7\|chr4 (125596171-125595664)

	tes (0.207814)
	fhi (0.169578)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	pgl (0.118483)